Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1526
         (700 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair pro...   217   2e-56
BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p pro...   217   2e-56
AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p pro...   217   2e-56
AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA...   217   2e-56

>M25772-1|AAA53372.1|  317|Drosophila melanogaster DNA repair
           protein protein.
          Length = 317

 Score =  217 bits (529), Expect = 2e-56
 Identities = 117/191 (61%), Positives = 123/191 (64%), Gaps = 1/191 (0%)
 Frame = -3

Query: 695 NTGLGPEKTSXFQALXIPTKISKGXIEIINDVHILKPGDKVGASXATLLNMLNIFPXSYG 516
           NTGLGPEKTS FQAL IPTKISKG IEIINDV ILKPGDKVGAS ATLLNMLNI P SYG
Sbjct: 127 NTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYG 186

Query: 515 LVVKQVYDSGTIFAPEIXDIKPEDXRAKFQXXXXXXXXXXXAIGYPTIASAPHSIANGFK 336
           L+V QVYDSG+IF+PEI DIKPED RAKFQ           ++GYPTIASAPHSIANGFK
Sbjct: 187 LIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFK 246

Query: 335 NLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 159
           NLL               IKE+IKDPSKF                               
Sbjct: 247 NLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPESESEE 306

Query: 158 SDDDMGFGLFD 126
            DDDMGFGLFD
Sbjct: 307 EDDDMGFGLFD 317


>BT021447-1|AAX33595.1|  317|Drosophila melanogaster GH01513p
           protein.
          Length = 317

 Score =  217 bits (529), Expect = 2e-56
 Identities = 117/191 (61%), Positives = 123/191 (64%), Gaps = 1/191 (0%)
 Frame = -3

Query: 695 NTGLGPEKTSXFQALXIPTKISKGXIEIINDVHILKPGDKVGASXATLLNMLNIFPXSYG 516
           NTGLGPEKTS FQAL IPTKISKG IEIINDV ILKPGDKVGAS ATLLNMLNI P SYG
Sbjct: 127 NTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYG 186

Query: 515 LVVKQVYDSGTIFAPEIXDIKPEDXRAKFQXXXXXXXXXXXAIGYPTIASAPHSIANGFK 336
           L+V QVYDSG+IF+PEI DIKPED RAKFQ           ++GYPTIASAPHSIANGFK
Sbjct: 187 LIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFK 246

Query: 335 NLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 159
           NLL               IKE+IKDPSKF                               
Sbjct: 247 NLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPESESEE 306

Query: 158 SDDDMGFGLFD 126
            DDDMGFGLFD
Sbjct: 307 EDDDMGFGLFD 317


>AY075528-1|AAL68335.1|  317|Drosophila melanogaster RE74511p
           protein.
          Length = 317

 Score =  217 bits (529), Expect = 2e-56
 Identities = 117/191 (61%), Positives = 123/191 (64%), Gaps = 1/191 (0%)
 Frame = -3

Query: 695 NTGLGPEKTSXFQALXIPTKISKGXIEIINDVHILKPGDKVGASXATLLNMLNIFPXSYG 516
           NTGLGPEKTS FQAL IPTKISKG IEIINDV ILKPGDKVGAS ATLLNMLNI P SYG
Sbjct: 127 NTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYG 186

Query: 515 LVVKQVYDSGTIFAPEIXDIKPEDXRAKFQXXXXXXXXXXXAIGYPTIASAPHSIANGFK 336
           L+V QVYDSG+IF+PEI DIKPED RAKFQ           ++GYPTIASAPHSIANGFK
Sbjct: 187 LIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFK 246

Query: 335 NLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 159
           NLL               IKE+IKDPSKF                               
Sbjct: 247 NLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPESESEE 306

Query: 158 SDDDMGFGLFD 126
            DDDMGFGLFD
Sbjct: 307 EDDDMGFGLFD 317


>AE014296-3653|AAF51807.1|  317|Drosophila melanogaster CG7490-PA
           protein.
          Length = 317

 Score =  217 bits (529), Expect = 2e-56
 Identities = 117/191 (61%), Positives = 123/191 (64%), Gaps = 1/191 (0%)
 Frame = -3

Query: 695 NTGLGPEKTSXFQALXIPTKISKGXIEIINDVHILKPGDKVGASXATLLNMLNIFPXSYG 516
           NTGLGPEKTS FQAL IPTKISKG IEIINDV ILKPGDKVGAS ATLLNMLNI P SYG
Sbjct: 127 NTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEATLLNMLNISPFSYG 186

Query: 515 LVVKQVYDSGTIFAPEIXDIKPEDXRAKFQXXXXXXXXXXXAIGYPTIASAPHSIANGFK 336
           L+V QVYDSG+IF+PEI DIKPED RAKFQ           ++GYPTIASAPHSIANGFK
Sbjct: 187 LIVNQVYDSGSIFSPEILDIKPEDLRAKFQQGVANLAAVCLSVGYPTIASAPHSIANGFK 246

Query: 335 NLLXXXXXXXXXXXXXXXIKEFIKDPSKF-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 159
           NLL               IKE+IKDPSKF                               
Sbjct: 247 NLLAIAATTEVEFKEATTIKEYIKDPSKFAAAASASAAPAAGGATEKKEEAKKPESESEE 306

Query: 158 SDDDMGFGLFD 126
            DDDMGFGLFD
Sbjct: 307 EDDDMGFGLFD 317


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,198,743
Number of Sequences: 53049
Number of extensions: 383066
Number of successful extensions: 738
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3067209849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)