Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1526
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   2.8  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   2.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   8.5  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.5  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 584 GDKVGASXATLLNMLNIFPXSYGLVVKQVYDSGTIFAP 471
           G+  G S  +L ++++  P + GLV + +  SGT+ AP
Sbjct: 251 GESAGGSSVSL-HLIS--PVTRGLVRRGILQSGTLNAP 285


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 584 GDKVGASXATLLNMLNIFPXSYGLVVKQVYDSGTIFAP 471
           G+  G S  +L ++++  P + GLV + +  SGT+ AP
Sbjct: 251 GESAGGSSVSL-HLIS--PVTRGLVRRGILQSGTLNAP 285


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +3

Query: 432 LGTXIFWFDVXNFRXKNSSRIIYLLNNK 515
           LG  +FW +  +    N     YLLN K
Sbjct: 9   LGFLLFWQNSASLENDNEFGFSYLLNCK 36


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 582 TGLQDVYIVDDFN 620
           TG+ D+++ DD N
Sbjct: 114 TGISDLFVFDDLN 126


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,302
Number of Sequences: 438
Number of extensions: 2369
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)