Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1525
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.02 |||nuclear distribution protein NUDC |Schizosaccharo...    97   2e-21
SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.8  
SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    25   6.4  
SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    25   8.5  

>SPBC19F8.02 |||nuclear distribution protein NUDC
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 166

 Score = 96.7 bits (230), Expect = 2e-21
 Identities = 47/89 (52%), Positives = 59/89 (66%)
 Frame = -3

Query: 523 LFINLEKVNKMNWWGRLVTSDPEISTRKINPXPSKLSDLDGETRGLVEKMMYDQXQKEMG 344
           L I+LEK NKM WW  ++   P I    I P  SKLSDLD ETR  VEKMM +Q QK   
Sbjct: 80  LVIHLEKSNKMEWWSCVIKGHPSIDIGSIEPENSKLSDLDEETRATVEKMMLEQSQKR-- 137

Query: 343 LPTSDEQKKQEVLKKFMEQHPEMDFSKCK 257
              +DEQK+++VL+ FM+QHPE+DFS  +
Sbjct: 138 ---TDEQKRKDVLQNFMKQHPELDFSNVR 163


>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 88  VLYFKXYFXVIIAFYVKYITIS 153
           +L +K YF     FY KY+T S
Sbjct: 27  ILKYKVYFVTTDTFYCKYLTAS 48


>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 117 NYSFLRKVHHYFHSQRIC*NSYSNGYIM*RVVKYTSN 227
           N+  ++KVHHY +      NS  N   M   +KY +N
Sbjct: 423 NFPSVKKVHHYQYPNWSDCNSPENVKSMVEFLKYVNN 459


>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = -1

Query: 195 YIHCCSCFNIFFASGNSDVLYVKSYNYXKIT 103
           + H C  +N F +S   + + + S  Y KIT
Sbjct: 400 FAHACGIYNCFLSSNAPNAVNLPSDLYEKIT 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,536
Number of Sequences: 5004
Number of extensions: 38467
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)