Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1525
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0888 + 6805071-6805485,6806202-6806374,6806501-6806549,680... 126 2e-29
02_05_0720 - 31213391-31213617,31213724-31213772,31213898-312140... 32 0.40
08_02_1600 + 28133818-28133900,28134240-28134345,28135169-281352... 29 3.8
02_02_0699 + 13055146-13055758,13056230-13056324 29 3.8
03_02_0431 - 8384259-8384266,8384649-8384787,8385875-8386067,838... 28 5.0
08_01_0532 - 4611650-4612706,4613405-4613757 27 8.7
01_05_0291 - 20515206-20516262,20516961-20517313 27 8.7
01_04_0042 - 15372198-15373037 27 8.7
>06_01_0888 +
6805071-6805485,6806202-6806374,6806501-6806549,
6806654-6806820,6806919-6807002,6807097-6807135
Length = 308
Score = 126 bits (303), Expect = 2e-29
Identities = 57/89 (64%), Positives = 68/89 (76%)
Frame = -3
Query: 523 LFINLEKVNKMNWWGRLVTSDPEISTRKINPXPSKLSDLDGETRGLVEKMMYDQXQKEMG 344
L I L K N+M WW +V DPE+ T+K+ P SKL+DLD ETR VEKMM+DQ QK+MG
Sbjct: 218 LSILLTKQNQMEWWKSVVKGDPEVDTQKVEPENSKLADLDPETRQTVEKMMFDQRQKQMG 277
Query: 343 LPTSDEQKKQEVLKKFMEQHPEMDFSKCK 257
LPTSDE +KQ++LKKFM QHPEMDFS K
Sbjct: 278 LPTSDEMQKQDMLKKFMAQHPEMDFSNAK 306
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -2
Query: 596 IIDAEXXADVKIEESXWVLQDXRXLIYQLRKGEQNE 489
IID E VK+++ W ++D + L L K Q E
Sbjct: 194 IIDGELFKPVKVDDCFWSIEDGKSLSILLTKQNQME 229
>02_05_0720 -
31213391-31213617,31213724-31213772,31213898-31214076,
31215861-31216110
Length = 234
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/59 (28%), Positives = 28/59 (47%)
Frame = -3
Query: 523 LFINLEKVNKMNWWGRLVTSDPEISTRKINPXPSKLSDLDGETRGLVEKMMYDQXQKEM 347
L I L K N+ WW ++ DPE+ R + +L D D E + + +++ K M
Sbjct: 165 LSILLTKENQKEWWTSVIKGDPELDPRDMK--VPELRDCDVEAKETIVRILSHGLPKAM 221
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 596 IIDAEXXADVKIEESXWVLQDXRXLIYQLRKGEQNE 489
IID E VK+ + W ++D L L K Q E
Sbjct: 141 IIDGELFEPVKVNDCLWTIEDGNTLSILLTKENQKE 176
>08_02_1600 +
28133818-28133900,28134240-28134345,28135169-28135255,
28135354-28135438,28135510-28135691,28135921-28135991,
28136078-28136168,28136250-28136324,28136436-28136537,
28136620-28136742,28136823-28136891,28136990-28137058,
28137158-28137211,28137315-28137368
Length = 416
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = -3
Query: 568 SRLRSPRGCCRMXAXLFINLEKVNKMNWWGRLVTSD-PEISTRKINPXPSK 419
+RL R C++ + +KV+ M WG T+ P+ KIN P K
Sbjct: 225 TRLDENRAKCQLALKAGVFYDKVSNMTIWGNHSTTQVPDFLNAKINGRPVK 275
>02_02_0699 + 13055146-13055758,13056230-13056324
Length = 235
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = -3
Query: 454 ISTRKINPXPSKLSDLDGETRGLVEKMMYDQXQ---KEMGLPTSDEQKKQEVLKKFMEQH 284
+ST++I P SD DG+ G EK+ +Q + E+ LP ++++ + + +
Sbjct: 99 VSTKEITKFPEMTSDPDGKLDGKKEKLYPEQKEAIVSEISLPQILKKEETHIAVEVDDGS 158
Query: 283 PEMDFS 266
M+ S
Sbjct: 159 SNMELS 164
>03_02_0431 -
8384259-8384266,8384649-8384787,8385875-8386067,
8386180-8387702
Length = 620
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/43 (27%), Positives = 23/43 (53%)
Frame = -3
Query: 433 PXPSKLSDLDGETRGLVEKMMYDQXQKEMGLPTSDEQKKQEVL 305
P PS + + G RG + ++++ +++ LP EQK +L
Sbjct: 96 PGPSPSASVPGSRRGFLYGFVFNRQRQDERLPRGGEQKSVVIL 138
>08_01_0532 - 4611650-4612706,4613405-4613757
Length = 469
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 330 MNKRNKKYSRNSWNSIQRWT 271
+ KRN K ++ W+ I RWT
Sbjct: 225 LRKRNLKQCKDRWHKINRWT 244
>01_05_0291 - 20515206-20516262,20516961-20517313
Length = 469
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 330 MNKRNKKYSRNSWNSIQRWT 271
+ KRN K ++ W+ I RWT
Sbjct: 225 LRKRNLKQCKDRWHKINRWT 244
>01_04_0042 - 15372198-15373037
Length = 279
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -1
Query: 330 MNKRNKKYSRNSWNSIQRWT 271
+ +RN K ++ WN I +WT
Sbjct: 119 LRRRNAKQCKDRWNKINKWT 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,661,679
Number of Sequences: 37544
Number of extensions: 215411
Number of successful extensions: 460
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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