Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1525
         (600 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY328470-1|AAP93640.1|  332|Drosophila melanogaster nuclear migr...   163   1e-40
AY071485-1|AAL49107.1|  332|Drosophila melanogaster RE55422p pro...   163   1e-40
AE014296-2806|AAF49407.2|  332|Drosophila melanogaster CG9710-PA...   163   1e-40
BT023804-1|AAZ66311.1|  306|Drosophila melanogaster RE67940p pro...    40   0.002
AE014297-2393|AAN13748.2|  306|Drosophila melanogaster CG31251-P...    40   0.002
AY058725-1|AAL13954.1|  548|Drosophila melanogaster LD46533p pro...    29   4.8  
AE014134-2857|AAF53621.1|  548|Drosophila melanogaster CG6453-PA...    29   4.8  
Z11743-1|CAA77802.1| 1403|Drosophila melanogaster prospero protein.    29   6.4  
M81389-1|AAA28841.1| 1407|Drosophila melanogaster Pros protein p...    29   6.4  
D10609-1|BAA01464.1| 1403|Drosophila melanogaster prospero protein.    29   6.4  
BT015263-1|AAT94492.1| 1374|Drosophila melanogaster LD37627p pro...    29   6.4  
AF190403-1|AAF05703.1| 1403|Drosophila melanogaster homeodomain ...    29   6.4  
AE014297-1287|AAN13500.2| 1374|Drosophila melanogaster CG17228-P...    29   6.4  
AE014297-1286|AAF54628.2| 1403|Drosophila melanogaster CG17228-P...    29   6.4  
AE014297-1285|AAN13501.2| 1535|Drosophila melanogaster CG17228-P...    29   6.4  

>AY328470-1|AAP93640.1|  332|Drosophila melanogaster nuclear
           migration protein NudC protein.
          Length = 332

 Score =  163 bits (397), Expect = 1e-40
 Identities = 70/91 (76%), Positives = 83/91 (91%)
 Frame = -3

Query: 523 LFINLEKVNKMNWWGRLVTSDPEISTRKINPXPSKLSDLDGETRGLVEKMMYDQXQKEMG 344
           + I L+K+NKMNWW RLVT+DPEISTRKINP  SKLSDLDGETR +VEKMMYDQ QKE+G
Sbjct: 242 VMITLDKINKMNWWSRLVTTDPEISTRKINPESSKLSDLDGETRSMVEKMMYDQRQKELG 301

Query: 343 LPTSDEQKKQEVLKKFMEQHPEMDFSKCKFN 251
           LPTS+++KKQ++L+KF +QHPEMDFSKCKFN
Sbjct: 302 LPTSEDRKKQDILEKFKQQHPEMDFSKCKFN 332



 Score = 35.1 bits (77), Expect = 0.074
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = -2

Query: 596 IIDAEXXADVKIEESXWVLQDXRXLIYQLRK 504
           IID E   +VK EES WVLQD + ++  L K
Sbjct: 218 IIDGELCGEVKTEESVWVLQDSKTVMITLDK 248


>AY071485-1|AAL49107.1|  332|Drosophila melanogaster RE55422p
           protein.
          Length = 332

 Score =  163 bits (397), Expect = 1e-40
 Identities = 70/91 (76%), Positives = 83/91 (91%)
 Frame = -3

Query: 523 LFINLEKVNKMNWWGRLVTSDPEISTRKINPXPSKLSDLDGETRGLVEKMMYDQXQKEMG 344
           + I L+K+NKMNWW RLVT+DPEISTRKINP  SKLSDLDGETR +VEKMMYDQ QKE+G
Sbjct: 242 VMITLDKINKMNWWSRLVTTDPEISTRKINPESSKLSDLDGETRSMVEKMMYDQRQKELG 301

Query: 343 LPTSDEQKKQEVLKKFMEQHPEMDFSKCKFN 251
           LPTS+++KKQ++L+KF +QHPEMDFSKCKFN
Sbjct: 302 LPTSEDRKKQDILEKFKQQHPEMDFSKCKFN 332



 Score = 35.1 bits (77), Expect = 0.074
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = -2

Query: 596 IIDAEXXADVKIEESXWVLQDXRXLIYQLRK 504
           IID E   +VK EES WVLQD + ++  L K
Sbjct: 218 IIDGELCGEVKTEESVWVLQDSKTVMITLDK 248


>AE014296-2806|AAF49407.2|  332|Drosophila melanogaster CG9710-PA
           protein.
          Length = 332

 Score =  163 bits (397), Expect = 1e-40
 Identities = 70/91 (76%), Positives = 83/91 (91%)
 Frame = -3

Query: 523 LFINLEKVNKMNWWGRLVTSDPEISTRKINPXPSKLSDLDGETRGLVEKMMYDQXQKEMG 344
           + I L+K+NKMNWW RLVT+DPEISTRKINP  SKLSDLDGETR +VEKMMYDQ QKE+G
Sbjct: 242 VMITLDKINKMNWWSRLVTTDPEISTRKINPESSKLSDLDGETRSMVEKMMYDQRQKELG 301

Query: 343 LPTSDEQKKQEVLKKFMEQHPEMDFSKCKFN 251
           LPTS+++KKQ++L+KF +QHPEMDFSKCKFN
Sbjct: 302 LPTSEDRKKQDILEKFKQQHPEMDFSKCKFN 332



 Score = 35.1 bits (77), Expect = 0.074
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = -2

Query: 596 IIDAEXXADVKIEESXWVLQDXRXLIYQLRK 504
           IID E   +VK EES WVLQD + ++  L K
Sbjct: 218 IIDGELCGEVKTEESVWVLQDSKTVMITLDK 248


>BT023804-1|AAZ66311.1|  306|Drosophila melanogaster RE67940p
           protein.
          Length = 306

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = -3

Query: 523 LFINLEKVNKMNWWGRLVTSDPEISTRKINPXPSKLSDLDGETRGLVEKMMYDQ 362
           L I+ +K  ++ WW RL   DPEI ++KI      + DL  ET+  +EK+   Q
Sbjct: 207 LIISYDKAKEL-WWDRLFEGDPEIDSKKIE-CERYIDDLPEETQATIEKLRVQQ 258


>AE014297-2393|AAN13748.2|  306|Drosophila melanogaster CG31251-PA
           protein.
          Length = 306

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 20/54 (37%), Positives = 30/54 (55%)
 Frame = -3

Query: 523 LFINLEKVNKMNWWGRLVTSDPEISTRKINPXPSKLSDLDGETRGLVEKMMYDQ 362
           L I+ +K  ++ WW RL   DPEI ++KI      + DL  ET+  +EK+   Q
Sbjct: 207 LIISYDKAKEL-WWDRLFEGDPEIDSKKIE-CERYIDDLPEETQATIEKLRVQQ 258


>AY058725-1|AAL13954.1|  548|Drosophila melanogaster LD46533p
           protein.
          Length = 548

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 472 VTSDPEISTRKINPXPSKLSDLDGETRG 389
           V   PE++T  I P P KLS+   E  G
Sbjct: 314 VAQQPEVTTESIQPTPPKLSEEQAELAG 341


>AE014134-2857|AAF53621.1|  548|Drosophila melanogaster CG6453-PA
           protein.
          Length = 548

 Score = 29.1 bits (62), Expect = 4.8
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 472 VTSDPEISTRKINPXPSKLSDLDGETRG 389
           V   PE++T  I P P KLS+   E  G
Sbjct: 314 VAQQPEVTTESIQPTPPKLSEEQAELAG 341


>Z11743-1|CAA77802.1| 1403|Drosophila melanogaster prospero protein.
          Length = 1403

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = -1

Query: 486 GGVGLLPRTQKYLQGKLIQXHRNCRILM-VKHVV*LKR*CTIRXRKKWDYLQVMNKRNKK 310
           GG     + Q  LQ  L+  H    IL   K ++ L +      +++   LQ   + + K
Sbjct: 209 GGASSGEQHQSQLQHDLVAHHMLRNILQGKKELMQLDQELRTAMQQQQQQLQEKEQLHSK 268

Query: 309 YSRNSWNSIQRWTSPNANSTKVLINIIN 226
            + N+ N+I    + N N+T   IN+I+
Sbjct: 269 LNNNNNNNIAATANNNNNTTMESINLID 296


>M81389-1|AAA28841.1| 1407|Drosophila melanogaster Pros protein
           protein.
          Length = 1407

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = -1

Query: 486 GGVGLLPRTQKYLQGKLIQXHRNCRILM-VKHVV*LKR*CTIRXRKKWDYLQVMNKRNKK 310
           GG     + Q  LQ  L+  H    IL   K ++ L +      +++   LQ   + + K
Sbjct: 209 GGASSGEQHQSQLQHDLVAHHMLRNILQGKKELMQLDQELRTAMQQQQQQLQEKEQLHSK 268

Query: 309 YSRNSWNSIQRWTSPNANSTKVLINIIN 226
            + N+ N+I    + N N+T   IN+I+
Sbjct: 269 LNNNNNNNIAATANNNNNTTMESINLID 296


>D10609-1|BAA01464.1| 1403|Drosophila melanogaster prospero protein.
          Length = 1403

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = -1

Query: 486 GGVGLLPRTQKYLQGKLIQXHRNCRILM-VKHVV*LKR*CTIRXRKKWDYLQVMNKRNKK 310
           GG     + Q  LQ  L+  H    IL   K ++ L +      +++   LQ   + + K
Sbjct: 209 GGASSGEQHQSQLQHDLVAHHMLRNILQGKKELMQLDQELRTAMQQQQQQLQEKEQLHSK 268

Query: 309 YSRNSWNSIQRWTSPNANSTKVLINIIN 226
            + N+ N+I    + N N+T   IN+I+
Sbjct: 269 LNNNNNNNIAATANNNNNTTMESINLID 296


>BT015263-1|AAT94492.1| 1374|Drosophila melanogaster LD37627p
           protein.
          Length = 1374

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = -1

Query: 486 GGVGLLPRTQKYLQGKLIQXHRNCRILM-VKHVV*LKR*CTIRXRKKWDYLQVMNKRNKK 310
           GG     + Q  LQ  L+  H    IL   K ++ L +      +++   LQ   + + K
Sbjct: 209 GGASSGEQHQSQLQHDLVAHHMLRNILQGKKELMQLDQELRTAMQQQQQQLQEKEQLHSK 268

Query: 309 YSRNSWNSIQRWTSPNANSTKVLINIIN 226
            + N+ N+I    + N N+T   IN+I+
Sbjct: 269 LNNNNNNNIAATANNNNNTTMESINLID 296


>AF190403-1|AAF05703.1| 1403|Drosophila melanogaster homeodomain
           transcription factorProspero protein.
          Length = 1403

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = -1

Query: 486 GGVGLLPRTQKYLQGKLIQXHRNCRILM-VKHVV*LKR*CTIRXRKKWDYLQVMNKRNKK 310
           GG     + Q  LQ  L+  H    IL   K ++ L +      +++   LQ   + + K
Sbjct: 209 GGASSGEQHQSQLQHDLVAHHMLRNILQGKKELMQLDQELRTAMQQQQQQLQEKEQLHSK 268

Query: 309 YSRNSWNSIQRWTSPNANSTKVLINIIN 226
            + N+ N+I    + N N+T   IN+I+
Sbjct: 269 LNNNNNNNIAATANNNNNTTMESINLID 296


>AE014297-1287|AAN13500.2| 1374|Drosophila melanogaster CG17228-PD,
           isoform D protein.
          Length = 1374

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = -1

Query: 486 GGVGLLPRTQKYLQGKLIQXHRNCRILM-VKHVV*LKR*CTIRXRKKWDYLQVMNKRNKK 310
           GG     + Q  LQ  L+  H    IL   K ++ L +      +++   LQ   + + K
Sbjct: 209 GGASSGEQHQSQLQHDLVAHHMLRNILQGKKELMQLDQELRTAMQQQQQQLQEKEQLHSK 268

Query: 309 YSRNSWNSIQRWTSPNANSTKVLINIIN 226
            + N+ N+I    + N N+T   IN+I+
Sbjct: 269 LNNNNNNNIAATANNNNNTTMESINLID 296


>AE014297-1286|AAF54628.2| 1403|Drosophila melanogaster CG17228-PC,
           isoform C protein.
          Length = 1403

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = -1

Query: 486 GGVGLLPRTQKYLQGKLIQXHRNCRILM-VKHVV*LKR*CTIRXRKKWDYLQVMNKRNKK 310
           GG     + Q  LQ  L+  H    IL   K ++ L +      +++   LQ   + + K
Sbjct: 209 GGASSGEQHQSQLQHDLVAHHMLRNILQGKKELMQLDQELRTAMQQQQQQLQEKEQLHSK 268

Query: 309 YSRNSWNSIQRWTSPNANSTKVLINIIN 226
            + N+ N+I    + N N+T   IN+I+
Sbjct: 269 LNNNNNNNIAATANNNNNTTMESINLID 296


>AE014297-1285|AAN13501.2| 1535|Drosophila melanogaster CG17228-PA,
           isoform A protein.
          Length = 1535

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 1/88 (1%)
 Frame = -1

Query: 486 GGVGLLPRTQKYLQGKLIQXHRNCRILM-VKHVV*LKR*CTIRXRKKWDYLQVMNKRNKK 310
           GG     + Q  LQ  L+  H    IL   K ++ L +      +++   LQ   + + K
Sbjct: 209 GGASSGEQHQSQLQHDLVAHHMLRNILQGKKELMQLDQELRTAMQQQQQQLQEKEQLHSK 268

Query: 309 YSRNSWNSIQRWTSPNANSTKVLINIIN 226
            + N+ N+I    + N N+T   IN+I+
Sbjct: 269 LNNNNNNNIAATANNNNNTTMESINLID 296


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,754,418
Number of Sequences: 53049
Number of extensions: 383329
Number of successful extensions: 1035
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2441585082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)