Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1525
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical pr...   136   9e-33
AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.     136   9e-33
Z98866-19|CAB11556.2|  259|Caenorhabditis elegans Hypothetical p...    33   0.16 
AL110499-4|CAD30454.1|  197|Caenorhabditis elegans Hypothetical ...    29   2.5  
AC025715-9|AAK68440.2|  184|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical ...    27   7.7  

>Z81546-7|CAB04452.1|  320|Caenorhabditis elegans Hypothetical
           protein F53A2.4 protein.
          Length = 320

 Score =  136 bits (330), Expect = 9e-33
 Identities = 58/89 (65%), Positives = 73/89 (82%)
 Frame = -3

Query: 523 LFINLEKVNKMNWWGRLVTSDPEISTRKINPXPSKLSDLDGETRGLVEKMMYDQXQKEMG 344
           + + LEK+N M WW R + SDP I+T+++ P  SKLSDLDGETR +VEKMMYDQ QKEMG
Sbjct: 230 IVLTLEKINDMEWWNRFLDSDPPINTKEVKPENSKLSDLDGETRAMVEKMMYDQRQKEMG 289

Query: 343 LPTSDEQKKQEVLKKFMEQHPEMDFSKCK 257
           LPTSDE+KK ++L++FM+QHPEMDFS  K
Sbjct: 290 LPTSDEKKKHDMLQQFMKQHPEMDFSNAK 318


>AF164431-1|AAF82633.1|  320|Caenorhabditis elegans NUD-1 protein.
          Length = 320

 Score =  136 bits (330), Expect = 9e-33
 Identities = 58/89 (65%), Positives = 73/89 (82%)
 Frame = -3

Query: 523 LFINLEKVNKMNWWGRLVTSDPEISTRKINPXPSKLSDLDGETRGLVEKMMYDQXQKEMG 344
           + + LEK+N M WW R + SDP I+T+++ P  SKLSDLDGETR +VEKMMYDQ QKEMG
Sbjct: 230 IVLTLEKINDMEWWNRFLDSDPPINTKEVKPENSKLSDLDGETRAMVEKMMYDQRQKEMG 289

Query: 343 LPTSDEQKKQEVLKKFMEQHPEMDFSKCK 257
           LPTSDE+KK ++L++FM+QHPEMDFS  K
Sbjct: 290 LPTSDEKKKHDMLQQFMKQHPEMDFSNAK 318


>Z98866-19|CAB11556.2|  259|Caenorhabditis elegans Hypothetical
           protein Y49E10.22 protein.
          Length = 259

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = -3

Query: 460 PEISTRKIN----PXPSKLSDLDGETRGLVEKMMYDQXQKEM-GLPTSDEQKK 317
           PE+S +K +    P PSKL  LD  TR LV ++M  Q  K M G   SD +KK
Sbjct: 176 PEVSLKKSHIQKPPPPSKLESLDVLTRRLVSELM--QNDKTMNGRKLSDARKK 226


>AL110499-4|CAD30454.1|  197|Caenorhabditis elegans Hypothetical
           protein Y62F5A.9 protein.
          Length = 197

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = -3

Query: 385 VEKMMYDQXQKEMGLPTSDEQKKQEVLKKFMEQHP---EMDFSKCKFN 251
           +++    Q  K+M     DE K Q VL KFME  P   + DF +  F+
Sbjct: 51  IDEAKIHQLSKDMVSNDYDEDKVQRVLDKFMESLPADQKKDFGRLYFD 98


>AC025715-9|AAK68440.2|  184|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.10 protein.
          Length = 184

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -3

Query: 523 LFINLEKVNKMNWWGRLVTSDPE--ISTRKINPXPS 422
           +FI    +N+ +WW + +  +PE  I T  I P  S
Sbjct: 124 IFIKFSGINETDWWNKSIFGEPETKIPTFVIQPQQS 159


>Z81449-4|CAB03765.1|  811|Caenorhabditis elegans Hypothetical
           protein C46F11.4 protein.
          Length = 811

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 367 DQXQKEMGLPTSDEQKKQEVLKKFMEQHPE 278
           D  +K +G    DE+  QE L KFME++ E
Sbjct: 155 DPSKKGLGRADIDEEDMQESLFKFMEEYKE 184


>AC024758-3|AAF59456.3| 1037|Caenorhabditis elegans Hypothetical
           protein Y37E11AM.1 protein.
          Length = 1037

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -2

Query: 545 VLQDXRXLIYQLRKGEQNELVGSACYLGPRNIYK 444
           VL D + + Y+L KG   +LVG A + G R + K
Sbjct: 864 VLLDAKEIRYELTKGLAAKLVGEAGFSGRRRLAK 897


>AF003740-7|AAC48142.2|  625|Caenorhabditis elegans Hypothetical
           protein C41D11.7 protein.
          Length = 625

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 448 TRKINPXPSKLSD-LDGETRGLVEKMMYDQXQKEMGLPTSDEQKKQEV 308
           T + NP    L D L+      +E   +D  +KE G+P S+E+++  +
Sbjct: 27  TLEDNPESLTLQDVLESHMTDPIELNSFDSMEKEAGIPFSNEKQRTAI 74


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,485,742
Number of Sequences: 27780
Number of extensions: 211447
Number of successful extensions: 589
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)