Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1523
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    27   2.3  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    25   9.5  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    25   9.5  

>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 145 CSRSTITYLLNLVLYSIYLHFLY 77
           CSR  + +L N+++ S YL+ LY
Sbjct: 24  CSRKNMFFLKNIIVLSNYLYLLY 46


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 191 KQFMQCNRTYFSLRYLLSKYDYVFTQLSIIFHLLTFFI 78
           K  +QC   YF+L +L++ + +  + +S++  L  FFI
Sbjct: 183 KADIQC---YFALSWLITWFAHDVSDISVVCRLFDFFI 217


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 625 KALGVDFILIVIICVNVSPKYGSDTL 548
           K LG+DF + +++C     +YGS+ L
Sbjct: 147 KELGIDFPVNLLMCFEGMEEYGSEGL 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,920
Number of Sequences: 5004
Number of extensions: 56966
Number of successful extensions: 134
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)