Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1521
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce...    60   3e-10
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    55   7e-09
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    38   0.001
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    28   0.91 
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    27   1.6  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   2.8  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   6.4  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    25   6.4  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.5  

>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1004

 Score = 59.7 bits (138), Expect = 3e-10
 Identities = 32/63 (50%), Positives = 40/63 (63%)
 Frame = -3

Query: 523  ESVPDSEDHIPEETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAM 344
            +S  D E  +  ++I+FLYKL PG   KSYG N AR+AGIP  I  RA EIS+  EK+  
Sbjct: 908  KSKEDFETSV-SQSISFLYKLVPGVASKSYGLNVARMAGIPFSILSRATEISENYEKKHR 966

Query: 343  CAR 335
             AR
Sbjct: 967  NAR 969


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1254

 Score = 55.2 bits (127), Expect = 7e-09
 Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = -3

Query: 481  ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEK-EAMCARAFRDIMKMEN 305
            +TFLYKL  G CPKSYG N A +AG+P+++   A E + +LE+  A    A  DI  M +
Sbjct: 1168 VTFLYKLEDGICPKSYGMNVASMAGLPEKVIDAAEEKASELEQASASFINASDDIALMSD 1227


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
            1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 37.5 bits (83), Expect = 0.001
 Identities = 19/47 (40%), Positives = 26/47 (55%)
 Frame = -3

Query: 511  DSEDHIPEETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEI 371
            D +DH    T +F YKL  G   +S+G   A +AGIPK +   A E+
Sbjct: 885  DRDDH----TFSFDYKLKKGVNYQSHGLKVAEMAGIPKNVLLAAEEV 927


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 28.3 bits (60), Expect = 0.91
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = -1

Query: 135  LFSKIVGCENMKTYFL*VLLC*HSSQERIHNSIYE 31
            +F +I+  E++KTY    LLC H SQ+RI  SI E
Sbjct: 1538 VFLRILS-ESIKTY---TLLCAHDSQKRIGGSIQE 1568


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 162 IY*MVLTCFLFSKIVGCENMKT 97
           IY  +L+C   S ++GC N+K+
Sbjct: 245 IYTTILSCITISLLIGCRNLKS 266


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 448 CPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCAR 335
           C   Y     RLA  PK    R H ++++ E+E +C R
Sbjct: 550 CCSGYSKAQTRLARRPKGAKLRYHLLTEEFEEEHICFR 587


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 400 KEITRRAHEISKKLEKEAM 344
           KE+ RR H +  K EKEA+
Sbjct: 5   KELARRLHTLQSKNEKEAL 23


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -3

Query: 373 ISKKLEKEAMCARAFRDIM 317
           + K+L+KE  C ++F+D M
Sbjct: 71  VGKQLDKEITCLKSFKDFM 89


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 22/71 (30%), Positives = 27/71 (38%)
 Frame = -3

Query: 565 GLVLGHMACMVETDESVPDSEDHIPEETITFLYKLSPGACPKSYGFNAARLAGIPKEITR 386
           GL  G    + + DES    E  IPE    F  K   G       F+      IP E   
Sbjct: 287 GLTAGKSDPVTDVDESQTIDEQSIPEAEKGFYTKDGEGTA--GLPFDIVSNLDIPNE--- 341

Query: 385 RAHEISKKLEK 353
            AHE S+  +K
Sbjct: 342 NAHESSRSKKK 352


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,533,563
Number of Sequences: 5004
Number of extensions: 53129
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)