Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1521
(600 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,423... 66 2e-11
09_04_0072 + 14323449-14324274,14324351-14324447,14325175-143252... 66 3e-11
04_04_1630 - 34896021-34896143,34896329-34896403,34896500-348965... 44 7e-05
05_03_0254 + 11089236-11089290,11089366-11089415,11089530-110895... 41 7e-04
04_04_0447 - 25297351-25297575,25297663-25298370,25298824-252991... 33 0.23
03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238 29 2.8
02_05_0848 + 32195610-32195625,32196078-32197585 28 6.6
11_03_0177 + 11269754-11270320,11271701-11272180,11272663-112732... 27 8.7
>01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,
4235329-4235470,4235519-4235905,4236045-4236230,
4236382-4236659,4236757-4236883,4237270-4237442,
4237610-4237657,4237734-4237767,4237837-4237965,
4238865-4238960,4239419-4239485,4240030-4240085,
4240522-4240617,4241127-4242222,4243221-4243402
Length = 1244
Score = 66.1 bits (154), Expect = 2e-11
Identities = 31/73 (42%), Positives = 45/73 (61%)
Frame = -3
Query: 598 HSLVRHLAAHDGLVLGHMACMVETDESVPDSEDHIPEETITFLYKLSPGACPKSYGFNAA 419
H L + A+H + L HMACM++ P + E+ +TFLY+L+ GACP+SYG A
Sbjct: 1108 HPLTKEFASHPHVTLQHMACMLK-----PRNGGDGGEKELTFLYRLTSGACPESYGLQVA 1162
Query: 418 RLAGIPKEITRRA 380
+AG+P+ I RA
Sbjct: 1163 TMAGLPRSIVERA 1175
>09_04_0072 + 14323449-14324274,14324351-14324447,14325175-14325277,
14325359-14325412,14325495-14325569,14325597-14325650,
14325687-14325755,14325840-14325923,14326115-14326312,
14326428-14326927,14327011-14327140,14328226-14328317,
14328776-14328954,14329114-14329316,14329398-14329499,
14330047-14330209,14330690-14330979,14331088-14331225,
14331311-14331390,14331510-14331606,14331685-14331814,
14331921-14332162
Length = 1301
Score = 65.7 bits (153), Expect = 3e-11
Identities = 34/67 (50%), Positives = 41/67 (61%)
Frame = -3
Query: 556 LGHMACMVETDESVPDSEDHIPEETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAH 377
L HMAC + E E +TFLYKL+PG+CPKSYG N ARLAGIP + +RA+
Sbjct: 1181 LCHMACEISKGEG--------GLEEVTFLYKLTPGSCPKSYGVNVARLAGIPASVLQRAN 1232
Query: 376 EISKKLE 356
E S E
Sbjct: 1233 EKSSDFE 1239
>04_04_1630 - 34896021-34896143,34896329-34896403,34896500-34896556,
34897176-34897352,34897426-34897492,34898043-34898101,
34898188-34898241,34898455-34898604,34898709-34898918,
34898980-34899039,34899399-34899527,34899616-34899720,
34899935-34900024,34900630-34900695,34901047-34901115,
34901348-34901467,34901572-34901634,34901681-34901817,
34902070-34902160,34902298-34902463,34902700-34904172,
34905666-34905940,34906322-34906819,34906996-34907145,
34907840-34907911,34908006-34908266,34908478-34908558,
34908745-34908996,34909323-34909382,34909602-34909853,
34910385-34910549,34910589-34910849,34911267-34912307,
34913398-34913457,34914055-34914165,34914448-34914534,
34915227-34915300,34915397-34915490,34915644-34915689,
34916397-34916521
Length = 2501
Score = 44.4 bits (100), Expect = 7e-05
Identities = 21/44 (47%), Positives = 28/44 (63%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKE 350
ITFLYKL GA +S+G N A LA +P RA ++ KL++E
Sbjct: 1206 ITFLYKLVAGASDRSFGLNVALLAQLPSSCIERASVMAAKLQQE 1249
>05_03_0254 +
11089236-11089290,11089366-11089415,11089530-11089562,
11090601-11091674,11092245-11092728,11092857-11092882,
11092883-11092993,11093082-11093171,11093251-11093322,
11094043-11094153,11095086-11095143,11095605-11095804,
11096666-11096818,11097134-11097334
Length = 905
Score = 41.1 bits (92), Expect = 7e-04
Identities = 21/58 (36%), Positives = 32/58 (55%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMKME 308
+T LYK+ PGAC +S+G + A A P+ + A +++LE + A F D K E
Sbjct: 783 LTMLYKVEPGACDQSFGIHVAEFANFPEAVVALAKSKAEELE-DFSTAPNFSDDSKDE 839
>04_04_0447 - 25297351-25297575,25297663-25298370,25298824-25299123,
25299876-25299927,25300530-25300673,25301002-25301258,
25301533-25301739,25301819-25301992,25302409-25302432,
25302610-25302677,25304607-25304665,25304802-25304877,
25304965-25305070,25305268-25305377,25305831-25305995,
25306571-25306656,25306893-25306957,25307280-25307330,
25309009-25309056,25309677-25309796,25310226-25310301,
25310780-25310877,25312149-25312404,25313117-25313238
Length = 1198
Score = 32.7 bits (71), Expect = 0.23
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -3
Query: 469 YKLSPGACPKSYGFNAARLAGIPKEITRRAHEI 371
+KL G C +S F AR G+P I RRA E+
Sbjct: 976 WKLMDGICRESLAFQTARKEGMPDLIIRRAEEL 1008
>03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238
Length = 697
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 485 LLRYVIFAIGDRFVGFYHARHVPEHESIV 571
LL +VI ++GD VG Y R VP+ E+ V
Sbjct: 426 LLDFVIKSLGDTIVGNYIVRRVPDAETRV 454
>02_05_0848 + 32195610-32195625,32196078-32197585
Length = 507
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +2
Query: 515 DRFVGFYHARHVPEHESIVRRQVSHER 595
DR G YHAR E + Q SHER
Sbjct: 371 DRIRGVYHARPTETGEYVAVHQPSHER 397
>11_03_0177 +
11269754-11270320,11271701-11272180,11272663-11273292,
11273377-11273443,11273510-11273620,11273696-11275206
Length = 1121
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -3
Query: 550 HMACMVETDESVPDSEDHIPEETITFLYKLSPGAC 446
H + MVE+ E V +S I + TIT L C
Sbjct: 834 HSSAMVESPECVAESSQSIDDSTITQLCSFDMSQC 868
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,434,860
Number of Sequences: 37544
Number of extensions: 346713
Number of successful extensions: 876
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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