Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1521
(600 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U73737-1|AAB47425.1| 1360|Homo sapiens hMSH6 protein. 92 1e-18
U54777-1|AAB39212.2| 1360|Homo sapiens hMSH6 protein protein. 92 1e-18
U28946-1|AAC50461.1| 1360|Homo sapiens G/T mismatch binding prot... 92 1e-18
D89645-1|BAA23674.1| 1360|Homo sapiens GTBP-N protein. 92 1e-18
BC004246-1|AAH04246.1| 1360|Homo sapiens mutS homolog 6 (E. coli... 92 1e-18
AY082894-1|AAL87401.1| 1358|Homo sapiens mutS homolog 6 (E. coli... 92 1e-18
Y16676-1|CAC79990.1| 328|Homo sapiens sperm protein protein. 88 3e-17
U61981-1|AAB06045.1| 1128|Homo sapiens hMSH3 protein. 56 7e-08
J04810-1|AAB47281.1| 1137|Homo sapiens MSH3 protein. 56 7e-08
D61419-1|BAD27111.1| 1137|Homo sapiens hMSH3 protein protein. 56 7e-08
BC130436-1|AAI30437.1| 1137|Homo sapiens mutS homolog 3 (E. coli... 56 7e-08
BC130434-1|AAI30435.1| 1137|Homo sapiens mutS homolog 3 (E. coli... 56 7e-08
AY275681-1|AAP13535.1| 1140|Homo sapiens mutS homolog 3 (E. coli... 56 7e-08
U41221-1|AAA82080.1| 887|Homo sapiens hMSH2 protein. 44 5e-04
U04045-1|AAA61870.1| 934|Homo sapiens hMSH2 protein. 44 5e-04
U03911-1|AAA18643.1| 934|Homo sapiens hMSH2 protein. 44 5e-04
L47583-1|AAB59564.1| 934|Homo sapiens DNA mismatch repair prote... 44 5e-04
L47582-1|AAB59565.1| 934|Homo sapiens DNA mismatch repair prote... 44 5e-04
L47581-1|AAA76858.1| 934|Homo sapiens DNA mismatch repair prote... 44 5e-04
BC021566-1|AAH21566.1| 934|Homo sapiens mutS homolog 2, colon c... 44 5e-04
AY601851-1|AAS99351.1| 934|Homo sapiens mutS homolog 2, colon c... 44 5e-04
AK223284-1|BAD97004.1| 878|Homo sapiens mutS homolog 2 variant ... 44 5e-04
AK222860-1|BAD96580.1| 878|Homo sapiens mutS homolog 2 variant ... 44 5e-04
D13644-1|BAA02807.2| 838|Homo sapiens KIAA0019 protein protein. 31 3.1
BC042943-1|AAH42943.1| 828|Homo sapiens USP6 N-terminal like pr... 31 3.1
AL590416-1|CAI16966.1| 828|Homo sapiens USP6 N-terminal like pr... 31 3.1
AL512631-1|CAH70484.1| 828|Homo sapiens USP6 N-terminal like pr... 31 3.1
BX248133-5|CAM26105.1| 497|Homo sapiens mutS homolog 5 (E. coli... 30 5.4
BX248133-4|CAM26107.1| 496|Homo sapiens mutS homolog 5 (E. coli... 30 5.4
BX248133-1|CAM26103.1| 508|Homo sapiens mutS homolog 5 (E. coli... 30 5.4
BT007200-1|AAP35864.1| 835|Homo sapiens mutS homolog 5 (E. coli... 30 5.4
BC126987-1|AAI26988.1| 305|Homo sapiens FLJ37440 protein protein. 30 5.4
BC126986-1|AAI26987.1| 393|Homo sapiens FLJ37440 protein protein. 30 5.4
BC038242-1|AAH38242.1| 261|Homo sapiens Similar to RIKEN cDNA 1... 30 5.4
BC035784-1|AAH35784.1| 439|Homo sapiens hypothetical protein FL... 30 5.4
BC002498-1|AAH02498.1| 835|Homo sapiens mutS homolog 5 (E. coli... 30 5.4
BC001358-1|AAH01358.1| 835|Homo sapiens mutS homolog 5 (E. coli... 30 5.4
BA000025-15|BAB63375.1| 834|Homo sapiens MSH5 protein. 30 5.4
AY943816-1|AAX20111.1| 851|Homo sapiens mutS homolog 5 (E. coli... 30 5.4
AL662899-41|CAM25671.1| 508|Homo sapiens mutS homolog 5 (E. col... 30 5.4
AL662899-39|CAI18424.1| 835|Homo sapiens mutS homolog 5 (E. col... 30 5.4
AL662899-37|CAI18423.1| 834|Homo sapiens mutS homolog 5 (E. col... 30 5.4
AL662834-6|CAM24984.1| 508|Homo sapiens mutS homolog 5 (E. coli... 30 5.4
AL662834-3|CAI17724.1| 835|Homo sapiens mutS homolog 5 (E. coli... 30 5.4
AL662834-2|CAI17723.1| 834|Homo sapiens mutS homolog 5 (E. coli... 30 5.4
AK094759-1|BAC04416.1| 439|Homo sapiens protein ( Homo sapiens ... 30 5.4
AJ245661-1|CAB52406.1| 851|Homo sapiens G7 protein protein. 30 5.4
AF134726-13|AAD21822.1| 834|Homo sapiens MutSH5 protein. 30 5.4
AF070079-1|AAC70067.1| 834|Homo sapiens MutS homolog protein. 30 5.4
AF070071-1|AAC70066.1| 834|Homo sapiens MutS homolog protein. 30 5.4
AF048991-1|AAC62534.1| 834|Homo sapiens MutS homolog 5 protein. 30 5.4
AF034759-1|AAB87632.1| 834|Homo sapiens MutS homolog protein. 30 5.4
AC092645-2|AAY14854.1| 439|Homo sapiens unknown protein. 30 5.4
>U73737-1|AAB47425.1| 1360|Homo sapiens hMSH6 protein.
Length = 1360
Score = 92.3 bits (219), Expect = 1e-18
Identities = 45/93 (48%), Positives = 60/93 (64%)
Frame = -3
Query: 598 HSLVRHLAAHDGLVLGHMACMVETDESVPDSEDHIPEETITFLYKLSPGACPKSYGFNAA 419
HSLV + + + LGHMACMVE + P +ETITFLYK GACPKSYGFNAA
Sbjct: 1250 HSLVEDYSQNVAVRLGHMACMVENECEDPS------QETITFLYKFIKGACPKSYGFNAA 1303
Query: 418 RLAGIPKEITRRAHEISKKLEKEAMCARAFRDI 320
RLA +P+E+ ++ H +++ EK R FR++
Sbjct: 1304 RLANLPEEVIQKGHRKAREFEKMNQSLRLFREV 1336
>U54777-1|AAB39212.2| 1360|Homo sapiens hMSH6 protein protein.
Length = 1360
Score = 92.3 bits (219), Expect = 1e-18
Identities = 45/93 (48%), Positives = 60/93 (64%)
Frame = -3
Query: 598 HSLVRHLAAHDGLVLGHMACMVETDESVPDSEDHIPEETITFLYKLSPGACPKSYGFNAA 419
HSLV + + + LGHMACMVE + P +ETITFLYK GACPKSYGFNAA
Sbjct: 1250 HSLVEDYSQNVAVRLGHMACMVENECEDPS------QETITFLYKFIKGACPKSYGFNAA 1303
Query: 418 RLAGIPKEITRRAHEISKKLEKEAMCARAFRDI 320
RLA +P+E+ ++ H +++ EK R FR++
Sbjct: 1304 RLANLPEEVIQKGHRKAREFEKMNQSLRLFREV 1336
>U28946-1|AAC50461.1| 1360|Homo sapiens G/T mismatch binding protein
protein.
Length = 1360
Score = 92.3 bits (219), Expect = 1e-18
Identities = 45/93 (48%), Positives = 60/93 (64%)
Frame = -3
Query: 598 HSLVRHLAAHDGLVLGHMACMVETDESVPDSEDHIPEETITFLYKLSPGACPKSYGFNAA 419
HSLV + + + LGHMACMVE + P +ETITFLYK GACPKSYGFNAA
Sbjct: 1250 HSLVEDYSQNVAVRLGHMACMVENECEDPS------QETITFLYKFIKGACPKSYGFNAA 1303
Query: 418 RLAGIPKEITRRAHEISKKLEKEAMCARAFRDI 320
RLA +P+E+ ++ H +++ EK R FR++
Sbjct: 1304 RLANLPEEVIQKGHRKAREFEKMNQSLRLFREV 1336
>D89645-1|BAA23674.1| 1360|Homo sapiens GTBP-N protein.
Length = 1360
Score = 92.3 bits (219), Expect = 1e-18
Identities = 45/93 (48%), Positives = 60/93 (64%)
Frame = -3
Query: 598 HSLVRHLAAHDGLVLGHMACMVETDESVPDSEDHIPEETITFLYKLSPGACPKSYGFNAA 419
HSLV + + + LGHMACMVE + P +ETITFLYK GACPKSYGFNAA
Sbjct: 1250 HSLVEDYSQNVAVRLGHMACMVENECEDPS------QETITFLYKFIKGACPKSYGFNAA 1303
Query: 418 RLAGIPKEITRRAHEISKKLEKEAMCARAFRDI 320
RLA +P+E+ ++ H +++ EK R FR++
Sbjct: 1304 RLANLPEEVIQKGHRKAREFEKMNQSLRLFREV 1336
>BC004246-1|AAH04246.1| 1360|Homo sapiens mutS homolog 6 (E. coli)
protein.
Length = 1360
Score = 92.3 bits (219), Expect = 1e-18
Identities = 45/93 (48%), Positives = 60/93 (64%)
Frame = -3
Query: 598 HSLVRHLAAHDGLVLGHMACMVETDESVPDSEDHIPEETITFLYKLSPGACPKSYGFNAA 419
HSLV + + + LGHMACMVE + P +ETITFLYK GACPKSYGFNAA
Sbjct: 1250 HSLVEDYSQNVAVRLGHMACMVENECEDPS------QETITFLYKFIKGACPKSYGFNAA 1303
Query: 418 RLAGIPKEITRRAHEISKKLEKEAMCARAFRDI 320
RLA +P+E+ ++ H +++ EK R FR++
Sbjct: 1304 RLANLPEEVIQKGHRKAREFEKMNQSLRLFREV 1336
>AY082894-1|AAL87401.1| 1358|Homo sapiens mutS homolog 6 (E. coli)
protein.
Length = 1358
Score = 92.3 bits (219), Expect = 1e-18
Identities = 45/93 (48%), Positives = 60/93 (64%)
Frame = -3
Query: 598 HSLVRHLAAHDGLVLGHMACMVETDESVPDSEDHIPEETITFLYKLSPGACPKSYGFNAA 419
HSLV + + + LGHMACMVE + P +ETITFLYK GACPKSYGFNAA
Sbjct: 1250 HSLVEDYSQNVAVRLGHMACMVENECEDPS------QETITFLYKFIKGACPKSYGFNAA 1303
Query: 418 RLAGIPKEITRRAHEISKKLEKEAMCARAFRDI 320
RLA +P+E+ ++ H +++ EK R FR++
Sbjct: 1304 RLANLPEEVIQKGHRKAREFEKMNQSLRLFREV 1336
>Y16676-1|CAC79990.1| 328|Homo sapiens sperm protein protein.
Length = 328
Score = 87.8 bits (208), Expect = 3e-17
Identities = 44/93 (47%), Positives = 58/93 (62%)
Frame = -3
Query: 598 HSLVRHLAAHDGLVLGHMACMVETDESVPDSEDHIPEETITFLYKLSPGACPKSYGFNAA 419
H + R L + LGHMACMVE + P +ETITFLYK GACPKSYGFNAA
Sbjct: 218 HYISRRLFSKCCCGLGHMACMVENECEDPS------QETITFLYKFIKGACPKSYGFNAA 271
Query: 418 RLAGIPKEITRRAHEISKKLEKEAMCARAFRDI 320
RLA +P+E+ ++ H +++ EK R FR++
Sbjct: 272 RLANLPEEVIQKGHRKAREFEKMNQSLRLFREV 304
>U61981-1|AAB06045.1| 1128|Homo sapiens hMSH3 protein.
Length = 1128
Score = 56.4 bits (130), Expect = 7e-08
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Frame = -3
Query: 550 HMACMVETDESV--PDSEDHIPEETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAH 377
HM +V DES P + + +P+ +TFLY+++ G +SYG N A+LA +P EI ++A
Sbjct: 1020 HMGFLVSEDESKLDPGAAEQVPD-FVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAA 1078
Query: 376 EISKKLE 356
SK+LE
Sbjct: 1079 HKSKELE 1085
>J04810-1|AAB47281.1| 1137|Homo sapiens MSH3 protein.
Length = 1137
Score = 56.4 bits (130), Expect = 7e-08
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Frame = -3
Query: 550 HMACMVETDESV--PDSEDHIPEETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAH 377
HM +V DES P + + +P+ +TFLY+++ G +SYG N A+LA +P EI ++A
Sbjct: 1029 HMGFLVSEDESKLDPGTAEQVPD-FVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAA 1087
Query: 376 EISKKLE 356
SK+LE
Sbjct: 1088 HKSKELE 1094
>D61419-1|BAD27111.1| 1137|Homo sapiens hMSH3 protein protein.
Length = 1137
Score = 56.4 bits (130), Expect = 7e-08
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Frame = -3
Query: 550 HMACMVETDESV--PDSEDHIPEETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAH 377
HM +V DES P + + +P+ +TFLY+++ G +SYG N A+LA +P EI ++A
Sbjct: 1029 HMGFLVSEDESKLDPGTAEQVPD-FVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAA 1087
Query: 376 EISKKLE 356
SK+LE
Sbjct: 1088 HKSKELE 1094
>BC130436-1|AAI30437.1| 1137|Homo sapiens mutS homolog 3 (E. coli)
protein.
Length = 1137
Score = 56.4 bits (130), Expect = 7e-08
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Frame = -3
Query: 550 HMACMVETDESV--PDSEDHIPEETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAH 377
HM +V DES P + + +P+ +TFLY+++ G +SYG N A+LA +P EI ++A
Sbjct: 1029 HMGFLVSEDESKLDPGTAEQVPD-FVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAA 1087
Query: 376 EISKKLE 356
SK+LE
Sbjct: 1088 HKSKELE 1094
>BC130434-1|AAI30435.1| 1137|Homo sapiens mutS homolog 3 (E. coli)
protein.
Length = 1137
Score = 56.4 bits (130), Expect = 7e-08
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Frame = -3
Query: 550 HMACMVETDESV--PDSEDHIPEETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAH 377
HM +V DES P + + +P+ +TFLY+++ G +SYG N A+LA +P EI ++A
Sbjct: 1029 HMGFLVSEDESKLDPGTAEQVPD-FVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAA 1087
Query: 376 EISKKLE 356
SK+LE
Sbjct: 1088 HKSKELE 1094
>AY275681-1|AAP13535.1| 1140|Homo sapiens mutS homolog 3 (E. coli)
protein.
Length = 1140
Score = 56.4 bits (130), Expect = 7e-08
Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Frame = -3
Query: 550 HMACMVETDESV--PDSEDHIPEETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAH 377
HM +V DES P + + +P+ +TFLY+++ G +SYG N A+LA +P EI ++A
Sbjct: 1032 HMGFLVSEDESKLDPGTAEQVPD-FVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAA 1090
Query: 376 EISKKLE 356
SK+LE
Sbjct: 1091 HKSKELE 1097
>U41221-1|AAA82080.1| 887|Homo sapiens hMSH2 protein.
Length = 887
Score = 43.6 bits (98), Expect = 5e-04
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -3
Query: 490 EETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 353
EET+T LY++ G C +S+G + A LA PK + A + + +LE+
Sbjct: 808 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
>U04045-1|AAA61870.1| 934|Homo sapiens hMSH2 protein.
Length = 934
Score = 43.6 bits (98), Expect = 5e-04
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -3
Query: 490 EETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 353
EET+T LY++ G C +S+G + A LA PK + A + + +LE+
Sbjct: 808 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
>U03911-1|AAA18643.1| 934|Homo sapiens hMSH2 protein.
Length = 934
Score = 43.6 bits (98), Expect = 5e-04
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -3
Query: 490 EETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 353
EET+T LY++ G C +S+G + A LA PK + A + + +LE+
Sbjct: 808 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
>L47583-1|AAB59564.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 43.6 bits (98), Expect = 5e-04
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -3
Query: 490 EETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 353
EET+T LY++ G C +S+G + A LA PK + A + + +LE+
Sbjct: 808 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
>L47582-1|AAB59565.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 43.6 bits (98), Expect = 5e-04
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -3
Query: 490 EETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 353
EET+T LY++ G C +S+G + A LA PK + A + + +LE+
Sbjct: 808 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
>L47581-1|AAA76858.1| 934|Homo sapiens DNA mismatch repair protein
protein.
Length = 934
Score = 43.6 bits (98), Expect = 5e-04
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -3
Query: 490 EETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 353
EET+T LY++ G C +S+G + A LA PK + A + + +LE+
Sbjct: 808 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
>BC021566-1|AAH21566.1| 934|Homo sapiens mutS homolog 2, colon
cancer, nonpolyposis type 1 (E. coli) protein.
Length = 934
Score = 43.6 bits (98), Expect = 5e-04
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -3
Query: 490 EETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 353
EET+T LY++ G C +S+G + A LA PK + A + + +LE+
Sbjct: 808 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
>AY601851-1|AAS99351.1| 934|Homo sapiens mutS homolog 2, colon
cancer, nonpolyposis type 1 (E. coli) protein.
Length = 934
Score = 43.6 bits (98), Expect = 5e-04
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -3
Query: 490 EETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 353
EET+T LY++ G C +S+G + A LA PK + A + + +LE+
Sbjct: 808 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
>AK223284-1|BAD97004.1| 878|Homo sapiens mutS homolog 2 variant
protein.
Length = 878
Score = 43.6 bits (98), Expect = 5e-04
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -3
Query: 490 EETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 353
EET+T LY++ G C +S+G + A LA PK + A + + +LE+
Sbjct: 808 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
>AK222860-1|BAD96580.1| 878|Homo sapiens mutS homolog 2 variant
protein.
Length = 878
Score = 43.6 bits (98), Expect = 5e-04
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -3
Query: 490 EETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEK 353
EET+T LY++ G C +S+G + A LA PK + A + + +LE+
Sbjct: 808 EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEE 853
>D13644-1|BAA02807.2| 838|Homo sapiens KIAA0019 protein protein.
Length = 838
Score = 31.1 bits (67), Expect = 3.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 494 YVIFAIGDRFVGFYHARHVPEHESIVRRQ 580
Y+++ + DRF GF H +P+H V RQ
Sbjct: 49 YLVYKVTDRF-GFLHEEELPDHNVAVERQ 76
>BC042943-1|AAH42943.1| 828|Homo sapiens USP6 N-terminal like
protein.
Length = 828
Score = 31.1 bits (67), Expect = 3.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 494 YVIFAIGDRFVGFYHARHVPEHESIVRRQ 580
Y+++ + DRF GF H +P+H V RQ
Sbjct: 39 YLVYKVTDRF-GFLHEEELPDHNVAVERQ 66
>AL590416-1|CAI16966.1| 828|Homo sapiens USP6 N-terminal like
protein.
Length = 828
Score = 31.1 bits (67), Expect = 3.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 494 YVIFAIGDRFVGFYHARHVPEHESIVRRQ 580
Y+++ + DRF GF H +P+H V RQ
Sbjct: 39 YLVYKVTDRF-GFLHEEELPDHNVAVERQ 66
>AL512631-1|CAH70484.1| 828|Homo sapiens USP6 N-terminal like
protein.
Length = 828
Score = 31.1 bits (67), Expect = 3.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 494 YVIFAIGDRFVGFYHARHVPEHESIVRRQ 580
Y+++ + DRF GF H +P+H V RQ
Sbjct: 39 YLVYKVTDRF-GFLHEEELPDHNVAVERQ 66
>BX248133-5|CAM26105.1| 497|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 497
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 401 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 459
Query: 310 EN 305
EN
Sbjct: 460 EN 461
>BX248133-4|CAM26107.1| 496|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 496
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 400 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 458
Query: 310 EN 305
EN
Sbjct: 459 EN 460
>BX248133-1|CAM26103.1| 508|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 508
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 412 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 470
Query: 310 EN 305
EN
Sbjct: 471 EN 472
>BT007200-1|AAP35864.1| 835|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 835
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 739 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 797
Query: 310 EN 305
EN
Sbjct: 798 EN 799
>BC126987-1|AAI26988.1| 305|Homo sapiens FLJ37440 protein protein.
Length = 305
Score = 30.3 bits (65), Expect = 5.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -1
Query: 441 SPTVSMRPASLEYPKKSPAELTRYPRNWKRKPCAHEPLGIS*KWKTMPVALES 283
SP ++ Y K SP + R P +PC H P IS + ++P L++
Sbjct: 164 SPECPEGSGNVSYVKTSPFQCERNPCPMDSRPCRHLPKTISFHYLSLPSNLKT 216
>BC126986-1|AAI26987.1| 393|Homo sapiens FLJ37440 protein protein.
Length = 393
Score = 30.3 bits (65), Expect = 5.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -1
Query: 441 SPTVSMRPASLEYPKKSPAELTRYPRNWKRKPCAHEPLGIS*KWKTMPVALES 283
SP ++ Y K SP + R P +PC H P IS + ++P L++
Sbjct: 252 SPECPEGSGNVSYVKTSPFQCERNPCPMDSRPCRHLPKTISFHYLSLPSNLKT 304
>BC038242-1|AAH38242.1| 261|Homo sapiens Similar to RIKEN cDNA
1600015H20 gene protein.
Length = 261
Score = 30.3 bits (65), Expect = 5.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -1
Query: 441 SPTVSMRPASLEYPKKSPAELTRYPRNWKRKPCAHEPLGIS*KWKTMPVALES 283
SP ++ Y K SP + R P +PC H P IS + ++P L++
Sbjct: 120 SPECPEGSGNVSYVKTSPFQCERNPCPMDSRPCRHLPKTISFHYLSLPSNLKT 172
>BC035784-1|AAH35784.1| 439|Homo sapiens hypothetical protein
FLJ37440 protein.
Length = 439
Score = 30.3 bits (65), Expect = 5.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -1
Query: 441 SPTVSMRPASLEYPKKSPAELTRYPRNWKRKPCAHEPLGIS*KWKTMPVALES 283
SP ++ Y K SP + R P +PC H P IS + ++P L++
Sbjct: 298 SPECPEGSGNVSYVKTSPFQCERNPCPMDSRPCRHLPKTISFHYLSLPSNLKT 350
>BC002498-1|AAH02498.1| 835|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 835
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 739 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 797
Query: 310 EN 305
EN
Sbjct: 798 EN 799
>BC001358-1|AAH01358.1| 835|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 835
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 739 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 797
Query: 310 EN 305
EN
Sbjct: 798 EN 799
>BA000025-15|BAB63375.1| 834|Homo sapiens MSH5 protein.
Length = 834
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 738 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 796
Query: 310 EN 305
EN
Sbjct: 797 EN 798
>AY943816-1|AAX20111.1| 851|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 851
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 755 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 813
Query: 310 EN 305
EN
Sbjct: 814 EN 815
>AL662899-41|CAM25671.1| 508|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 508
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 412 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 470
Query: 310 EN 305
EN
Sbjct: 471 EN 472
>AL662899-39|CAI18424.1| 835|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 835
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 739 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 797
Query: 310 EN 305
EN
Sbjct: 798 EN 799
>AL662899-37|CAI18423.1| 834|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 834
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 738 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 796
Query: 310 EN 305
EN
Sbjct: 797 EN 798
>AL662834-6|CAM24984.1| 508|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 508
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 412 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 470
Query: 310 EN 305
EN
Sbjct: 471 EN 472
>AL662834-3|CAI17724.1| 835|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 835
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 739 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 797
Query: 310 EN 305
EN
Sbjct: 798 EN 799
>AL662834-2|CAI17723.1| 834|Homo sapiens mutS homolog 5 (E. coli)
protein.
Length = 834
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 738 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 796
Query: 310 EN 305
EN
Sbjct: 797 EN 798
>AK094759-1|BAC04416.1| 439|Homo sapiens protein ( Homo sapiens
cDNA FLJ37440 fis, clone BRAWH2006405, weakly similar to
FIBULIN-1, ISOFORM C PRECURSOR. ).
Length = 439
Score = 30.3 bits (65), Expect = 5.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -1
Query: 441 SPTVSMRPASLEYPKKSPAELTRYPRNWKRKPCAHEPLGIS*KWKTMPVALES 283
SP ++ Y K SP + R P +PC H P IS + ++P L++
Sbjct: 298 SPECPEGSGNVSYVKTSPFQCERNPCPMDSRPCRHLPKTISFHYLSLPSNLKT 350
>AJ245661-1|CAB52406.1| 851|Homo sapiens G7 protein protein.
Length = 851
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 755 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 813
Query: 310 EN 305
EN
Sbjct: 814 EN 815
>AF134726-13|AAD21822.1| 834|Homo sapiens MutSH5 protein.
Length = 834
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 738 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 796
Query: 310 EN 305
EN
Sbjct: 797 EN 798
>AF070079-1|AAC70067.1| 834|Homo sapiens MutS homolog protein.
Length = 834
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 738 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 796
Query: 310 EN 305
EN
Sbjct: 797 EN 798
>AF070071-1|AAC70066.1| 834|Homo sapiens MutS homolog protein.
Length = 834
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 738 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 796
Query: 310 EN 305
EN
Sbjct: 797 EN 798
>AF048991-1|AAC62534.1| 834|Homo sapiens MutS homolog 5 protein.
Length = 834
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 738 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 796
Query: 310 EN 305
EN
Sbjct: 797 EN 798
>AF034759-1|AAB87632.1| 834|Homo sapiens MutS homolog protein.
Length = 834
Score = 30.3 bits (65), Expect = 5.4
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = -3
Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK---M 311
+ F Y++ G S+ + A AG+P ++ R E+S L + + +D++K M
Sbjct: 738 LVFFYQVCEGVAKASHASHTAAQAGLPDKLVARGKEVS-DLIRSGKPIKPVKDLLKKNQM 796
Query: 310 EN 305
EN
Sbjct: 797 EN 798
>AC092645-2|AAY14854.1| 439|Homo sapiens unknown protein.
Length = 439
Score = 30.3 bits (65), Expect = 5.4
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -1
Query: 441 SPTVSMRPASLEYPKKSPAELTRYPRNWKRKPCAHEPLGIS*KWKTMPVALES 283
SP ++ Y K SP + R P +PC H P IS + ++P L++
Sbjct: 298 SPECPEGSGNVSYVKTSPFQCERNPCPMDSRPCRHLPKTISFHYLSLPSNLKT 350
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,349,630
Number of Sequences: 237096
Number of extensions: 1920897
Number of successful extensions: 3968
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 3782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3961
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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