Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1521
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    66   1e-11
AF106587-1|AAC78226.1|  849|Caenorhabditis elegans Msh (muts hom...    33   0.12 
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr...    31   0.63 
AL023828-18|CAA19462.2|  742|Caenorhabditis elegans Hypothetical...    31   0.63 
AL023828-17|CAA19463.2|  826|Caenorhabditis elegans Hypothetical...    31   0.63 
AJ132699-1|CAA10735.1|  742|Caenorhabditis elegans centaurin bet...    31   0.63 
AJ132698-1|CAA10734.1|  826|Caenorhabditis elegans centaurin bet...    31   0.63 
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.      31   0.63 
AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog ...    31   0.63 
Z93393-4|CAB07699.1|  360|Caenorhabditis elegans Hypothetical pr...    29   1.9  
AC026301-9|AAK68890.2|  313|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF125463-6|AAD12865.1|  301|Caenorhabditis elegans Hypothetical ...    27   7.7  

>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts homolog)
            family protein 6 protein.
          Length = 1186

 Score = 66.5 bits (155), Expect = 1e-11
 Identities = 35/95 (36%), Positives = 53/95 (55%)
 Frame = -3

Query: 598  HSLVRHLAAHDGLVLGHMACMVETDESVPDSEDHIPEETITFLYKLSPGACPKSYGFNAA 419
            HS+      H  + L HM C+V+ +    ++ED   E+ +TFLY+L  G CPKSYGF AA
Sbjct: 1078 HSICDSFTNHPNVRLAHMKCVVDKE----NNEDPTMED-VTFLYELESGICPKSYGFYAA 1132

Query: 418  RLAGIPKEITRRAHEISKKLEKEAMCARAFRDIMK 314
            +LAGI  ++ R A+  S K     +     R +++
Sbjct: 1133 KLAGIDHQVVRNAYLESNKFASNLIIDPKIRHLVE 1167


>AF106587-1|AAC78226.1|  849|Caenorhabditis elegans Msh (muts
           homolog) family protein 2 protein.
          Length = 849

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -3

Query: 496 IPEETITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLEKE 350
           I    I  LYK+  G    S+G   A++ GI + +  +A ++ + LEK+
Sbjct: 775 IENNEIHMLYKVFEGVAQCSFGLQVAKMVGIDENVINKAAQLLEGLEKK 823


>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical
           protein F09E8.3 protein.
          Length = 1369

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLE 356
           I +L++++PG    S+  + A+  GIP  +  RA  I K L+
Sbjct: 786 IKYLFRMTPGLVDCSFALSVAKEEGIPPPVIGRACRIYKALK 827


>AL023828-18|CAA19462.2|  742|Caenorhabditis elegans Hypothetical
           protein Y17G7B.15b protein.
          Length = 742

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +2

Query: 416 AGRIETVGLRTSTWTQLV*ER-DSLLRYVIFAIGDRFVGFYHARHVPEHESIVRRQVSHE 592
           +G   ++G++TS    L  +  D+ LR V+ A+G+R V      H+P  +SIV  Q++ +
Sbjct: 402 SGAHRSLGVQTSKVRSLCMDSIDNELRDVLLALGNRQVNEIFLAHLPPADSIVPPQINEK 461


>AL023828-17|CAA19463.2|  826|Caenorhabditis elegans Hypothetical
           protein Y17G7B.15a protein.
          Length = 826

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +2

Query: 416 AGRIETVGLRTSTWTQLV*ER-DSLLRYVIFAIGDRFVGFYHARHVPEHESIVRRQVSHE 592
           +G   ++G++TS    L  +  D+ LR V+ A+G+R V      H+P  +SIV  Q++ +
Sbjct: 486 SGAHRSLGVQTSKVRSLCMDSIDNELRDVLLALGNRQVNEIFLAHLPPADSIVPPQINEK 545


>AJ132699-1|CAA10735.1|  742|Caenorhabditis elegans centaurin beta
           1B protein.
          Length = 742

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +2

Query: 416 AGRIETVGLRTSTWTQLV*ER-DSLLRYVIFAIGDRFVGFYHARHVPEHESIVRRQVSHE 592
           +G   ++G++TS    L  +  D+ LR V+ A+G+R V      H+P  +SIV  Q++ +
Sbjct: 402 SGAHRSLGVQTSKVRSLCMDSIDNELRDVLLALGNRQVNEIFLAHLPPADSIVPPQINEK 461


>AJ132698-1|CAA10734.1|  826|Caenorhabditis elegans centaurin beta
           1A protein.
          Length = 826

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = +2

Query: 416 AGRIETVGLRTSTWTQLV*ER-DSLLRYVIFAIGDRFVGFYHARHVPEHESIVRRQVSHE 592
           +G   ++G++TS    L  +  D+ LR V+ A+G+R V      H+P  +SIV  Q++ +
Sbjct: 486 SGAHRSLGVQTSKVRSLCMDSIDNELRDVLLALGNRQVNEIFLAHLPPADSIVPPQINEK 545


>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
          Length = 1369

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLE 356
           I +L++++PG    S+  + A+  GIP  +  RA  I K L+
Sbjct: 786 IKYLFRMTPGLVDCSFALSVAKEEGIPPPVIGRACRIYKALK 827


>AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog
           protein.
          Length = 933

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 481 ITFLYKLSPGACPKSYGFNAARLAGIPKEITRRAHEISKKLE 356
           I +L++++PG    S+  + A+  GIP  +  RA  I K L+
Sbjct: 786 IKYLFRMTPGLVDCSFALSVAKEEGIPPPVIGRACRIYKALK 827


>Z93393-4|CAB07699.1|  360|Caenorhabditis elegans Hypothetical
           protein Y48E1B.3 protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +2

Query: 347 GFLFQFL---GYLVSSAGDFFGYSSEAGRIETVGLRTSTWTQLV*ERDSLLRYVIFAIGD 517
           GFL Q L   G +  + GD     S    I ++ L    WT+ V  R  + R + +AI  
Sbjct: 194 GFLRQSLNIDGGIGQAPGDESHGGSTFCAIASLALSNRLWTEEVLTRRDIDRLIRWAIQK 253

Query: 518 RFVGFYHARHVPE 556
           + +GF+   H P+
Sbjct: 254 QDIGFHGRAHKPD 266


>AC026301-9|AAK68890.2|  313|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.11 protein.
          Length = 313

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 163 WYQLSIFRLKEFAYNEKSQIIAFFKFT 243
           W+Q+    + +F +N+ S II +FK T
Sbjct: 141 WFQVKKLEIWDFEFNDVSTIIPYFKTT 167


>AF125463-6|AAD12865.1|  301|Caenorhabditis elegans Hypothetical
           protein Y49F6C.3 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = -2

Query: 377 RDIQETGKGSHVRTSL*GYHENGKQCRWR*RVAGNTDNLSVAVCCVNLK 231
           +++ E  KG +  +      E     RW  ++A   +N+ V +CC  LK
Sbjct: 12  KNVSELEKGKYFHSPA----EEHFNVRWNIKIARKNENIGVYLCCQRLK 56


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,250,588
Number of Sequences: 27780
Number of extensions: 311654
Number of successful extensions: 839
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)