Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1520
         (800 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   5.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   7.6  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   7.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   7.6  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   7.6  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +2

Query: 425 IYLINVGIQCTYSIQ 469
           ++ IN+GI+C Y I+
Sbjct: 463 LFRINLGIECGYEIK 477


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 496 ISYIKAVCILYAVCTL 449
           +SY+KAV    +VCT+
Sbjct: 301 VSYLKAVDAFMSVCTV 316


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 689 PII*YWYYLFWWNTFLF 739
           PI+  ++ L +W+T+LF
Sbjct: 424 PIVFAFFNLAYWSTYLF 440


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +2

Query: 689 PII*YWYYLFWWNTFLF 739
           PI+  ++ L +W+T+LF
Sbjct: 424 PIVFAFFNLAYWSTYLF 440


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 341 SFNLTKNDFNWXIT 382
           ++NL + D NW IT
Sbjct: 23  AYNLNQEDSNWIIT 36


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,993
Number of Sequences: 438
Number of extensions: 4561
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)