Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1515
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.2  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   3.0  
SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces ...    27   3.0  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    26   5.2  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   6.9  
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa...    26   6.9  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   6.9  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    26   6.9  

>SPBC4B4.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 110

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 554 REASELNYVPATEAEWKPINHPQFRNLD 471
           RE  E   + A E EWKP+N     NL+
Sbjct: 38  REKIEAKLIWAGEWEWKPVNETNENNLE 65


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -1

Query: 713 GLTTEKVTTTXKSRDPSXDNHEFTW-NGKRINYNYHPIIDFFGEDEREAEESIDREASE 540
           G T +K +   KS     D   F+  N K +NYN     + F E+E E       E SE
Sbjct: 127 GGTPKKRSRQKKSNTYVQDEIRFSSRNSKGVNYNEDAYFESFEEEEEEEMYEYATEVSE 185


>SPBC30D10.17c |||glucan synthase regulator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 752 PDRHTTHDSS*APGLTTEKVTTTXKSRDPSXDNH 651
           PD  T   S+     T E VTTT  ++D   ++H
Sbjct: 437 PDEPTAETSNPVSATTVEAVTTTADNKDEEKNDH 470


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -1

Query: 692 TTTXKSRDPSXDNHEFTWNGKRINYNYHPIIDFFGEDEREAEESIDREASE 540
           T T  S +PS +  E   +   I+ N    +D FG+ E E E+  D + ++
Sbjct: 32  TFTPGSPEPSMNGEEKESSYFPISENDDGTLDLFGDSELEKEQKGDNQETD 82


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -1

Query: 632 KRINYNYHPIIDFFGEDEREAEESIDREASELNYVPATEAEWKPINH 492
           +++   Y PIIDF     + A+   D   S   Y+     +W+ ++H
Sbjct: 199 EQVEEEYEPIIDFVLNHRKRADAQDDDPKSSYQYL----IKWQEVSH 241


>SPAC1783.07c |pap1|caf3, caf3|transcription factor
           Caf3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 552

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -1

Query: 548 ASELNYVPATEAEWKPINHPQFRNLDVSNTVDRKK 444
           A E  Y+   +   K INHP+F + D+ +   + K
Sbjct: 493 AKERAYLSCPKVWSKIINHPRFESFDIDDLCSKLK 527


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -1

Query: 707 TTEKVTTTXKSRDPSXDNHEFTWNGKRINYNYHP 606
           TTE V T   S+ P+   H F    ++ +Y Y P
Sbjct: 382 TTEYVNTESSSKTPAPHKHTFNSCYQKKDYGYIP 415


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 9/28 (32%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
 Frame = +3

Query: 393 LSKFSCLLN---RDSYLALRFLSINCIG 467
           +S+  C+++   RDS+L+ R + + C+G
Sbjct: 210 ISEIKCIISGFLRDSFLSFRVMLVKCVG 237


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,663,931
Number of Sequences: 5004
Number of extensions: 50156
Number of successful extensions: 125
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)