Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1515
         (770 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1187 + 35232252-35232976,35233078-35233134,35233323-35233692     30   2.4  
06_01_0156 + 1171717-1174140                                           28   9.5  
01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,650...    28   9.5  

>01_06_1187 + 35232252-35232976,35233078-35233134,35233323-35233692
          Length = 383

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -1

Query: 620 YNYHPIIDFFGEDEREA--EESIDREASELNYVPATE 516
           YNYH   D +G D  EA  E++ D ++   N++  T+
Sbjct: 262 YNYHEYPDAYGHDNSEAIEEQNFDWDSDNDNFINTTD 298


>06_01_0156 + 1171717-1174140
          Length = 807

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 501 WFPFCFCSRHIV*FTGFSVYRLLRLSLIFPKEIDNWMIIIIYSLSIPCK 647
           W      S H + F  FSV    RLSL  P  + +  + I+ ++S+PC+
Sbjct: 506 WARSKMLSHHGLRFKQFSVLSSCRLSLTLPAAV-SLALAILPAVSVPCQ 553


>01_01_0832 - 6500139-6500333,6500610-6500875,6501494-6501815,
            6501915-6502156,6502229-6502457,6503020-6503184,
            6503279-6503605,6504150-6504191,6504333-6504400,
            6504748-6504934,6506249-6506311,6506748-6506790,
            6506919-6507019,6507110-6507184,6507359-6507445,
            6507593-6507682,6507906-6507992,6508585-6508783,
            6509113-6509177,6509502-6509606,6509726-6509871,
            6510100-6510224,6510335-6510437,6510482-6510596,
            6510734-6510869,6511298-6511387,6511484-6511578,
            6511698-6511763,6511868-6511936,6512034-6512147,
            6512241-6512448,6512545-6512600,6512818-6513552
          Length = 1671

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
 Frame = +1

Query: 232  YYNMISNKSY--FFNLVIYFGKYYLTGVTPLFTRALTHHNVIAIILREKYSRRFLS 393
            +YN +++K    F   ++Y+   +  G+  ++TR ++H    +  +   Y+R  LS
Sbjct: 1048 FYNALADKDQEQFTKQLLYYLGGFAVGIPIVYTRIISHITRFSFFVLRDYARETLS 1103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,644,716
Number of Sequences: 37544
Number of extensions: 270722
Number of successful extensions: 523
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)