Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1513
(400 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 40 1e-04
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 40 1e-04
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 31 0.087
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 29 0.35
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 28 0.61
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 28 0.61
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 27 1.1
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 26 1.9
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 3.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 3.3
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 3.3
SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb... 25 4.3
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 5.7
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 25 5.7
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 24 7.6
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos... 24 10.0
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 24 10.0
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 24 10.0
SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr 1|||Ma... 24 10.0
SPAC2F3.02 |||ER protein translocation subcomplex subunit|Schizo... 24 10.0
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 24 10.0
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 24 10.0
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 24 10.0
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 40.3 bits (90), Expect = 1e-04
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -3
Query: 263 QEARPW-RCLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATCT 129
Q RP RC C GH +C + +C+ C Q+GHKA+ CT
Sbjct: 11 QTTRPGPRCYNCGENGHQARECT----KGSICYNCNQTGHKASECT 52
Score = 36.7 bits (81), Expect = 0.001
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -3
Query: 245 RCLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATCTA 126
+C C GH +C D LC++C Q GH A CT+
Sbjct: 136 KCYSCGKIGHRSFECQQASDGQ-LCYKCNQPGHIAVNCTS 174
Score = 34.3 bits (75), Expect = 0.007
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATCTAVPH 117
C C TGH ++C + C+ CG +GH C + P+
Sbjct: 38 CYNCNQTGHKASECTEP-QQEKTCYACGTAGHLVRDCPSSPN 78
Score = 33.1 bits (72), Expect = 0.016
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -3
Query: 200 PSTVDRSGLCFRCGQSGHKAATCTAVPHCVLCD 102
P T C+ CG++GH+A CT C C+
Sbjct: 10 PQTTRPGPRCYNCGENGHQARECTKGSICYNCN 42
Score = 31.5 bits (68), Expect = 0.050
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSG----------LCFRCGQSGHKAATCTAVPHCVLC 105
C +C GH C + +SG C+ CG GH+A CT C C
Sbjct: 85 CYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKCYSC 140
Score = 29.5 bits (63), Expect = 0.20
Identities = 14/46 (30%), Positives = 18/46 (39%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATCTAVPHCVLC 105
C C GH C V C+ CG+ GH++ C LC
Sbjct: 118 CYACGSYGHQARDCTMGVK----CYSCGKIGHRSFECQQASDGQLC 159
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 39.9 bits (89), Expect = 1e-04
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = -3
Query: 263 QEARPWRCLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATCT 129
Q R C C GH + CP D +CFRCG H C+
Sbjct: 72 QRNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACS 116
Score = 28.7 bits (61), Expect = 0.35
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVD-RSGLCFRCGQSGHKAATCTAVP 120
C RC H L C + CF C ++GH + C P
Sbjct: 102 CFRCGSKEHSLNACSKKGPLKFAKCFICHENGHLSGQCEQNP 143
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 30.7 bits (66), Expect = 0.087
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSG--LCFRCGQSGHKAATC 132
C C GH CP ++ + +C CG GH A C
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDC 349
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 28.7 bits (61), Expect = 0.35
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 245 RCLRCFGTGHGLAKCPSTVDRSGLCFRCG 159
RC RC G H A CP ++ +CF CG
Sbjct: 1310 RC-RCCGIKHLPAHCPLSIVPLEICFLCG 1337
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.9 bits (59), Expect = 0.61
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSGLCFRCG 159
C +C H L +C + GLC CG
Sbjct: 1806 CYKCGKADHNLRECKLRIRFQGLCLFCG 1833
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.9 bits (59), Expect = 0.61
Identities = 10/28 (35%), Positives = 13/28 (46%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSGLCFRCG 159
C +C H L +C + GLC CG
Sbjct: 1806 CYKCGKADHNLRECKLRIRFQGLCLFCG 1833
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 27.1 bits (57), Expect = 1.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -3
Query: 176 LCFRCGQSGHKAATC 132
+C+RCGQ GH C
Sbjct: 184 ICYRCGQKGHWIQAC 198
Score = 25.0 bits (52), Expect = 4.3
Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Frame = -3
Query: 329 SGKPAXTPGRLRVGWIMAQVQLQEARP-WRCLRCFGTGHGLAKCPSTVD 186
S P P + R+ A V + P + C RC GH + CP+ D
Sbjct: 158 SATPIYKPNQRRIA---ASVPDKPPPPGYICYRCGQKGHWIQACPTNAD 203
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 26.2 bits (55), Expect = 1.9
Identities = 13/44 (29%), Positives = 17/44 (38%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATCTAVPHCV 111
C C GTG L P + C CG +G +A C+
Sbjct: 257 CFACKGTGQRLHFIPPSFHMQTTCDSCGGTGTTIPPNSACRSCM 300
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 3.3
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 96 RRITKYTVRNGGAGGSLVPGLTATE-TQSAAVDSRRAFSEAMPSTEA 233
+R+ K + GAG + PG+T+T S RA S + S A
Sbjct: 182 KRMMKASSGEAGAGNVITPGVTSTTGAPSGKASLSRAASNSSTSARA 228
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.4 bits (53), Expect = 3.3
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = -1
Query: 190 STAADCVSVAVSPGTRLPPAPPFRTVYFVMRRSGRPTXGLGGQHVVQPPP 41
S+ ++A + PP PP R R G+P G G + PPP
Sbjct: 296 SSRVSAAALAANKKRPPPPPPPSR------RNRGKPPIGNGSSNSSLPPP 339
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 25.4 bits (53), Expect = 3.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 267 LHLSHDPAYAQPSRRVGRLPTWRCGWKNGRL 359
L S DP + PSR V PT + G + RL
Sbjct: 605 LKFSKDPNSSSPSRHVVATPTDKLGTRKRRL 635
>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 4.3
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = -3
Query: 197 STVDRSGLCFRCGQSGHKAATCTAVP 120
+T R G C CG HK C P
Sbjct: 105 ATKYRKGACENCGAMSHKVKDCMERP 130
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 24.6 bits (51), Expect = 5.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 212 LAKCPSTVDRSGLCFRCGQSGHKAAT 135
++K PS+ S +CFRCGQ+ + T
Sbjct: 7 ISKSPSSKG-STVCFRCGQAFQRRET 31
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 24.6 bits (51), Expect = 5.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +1
Query: 298 SLPGVXAGFPLGGVAGRMAACTG 366
SL + AGF + G G MA C G
Sbjct: 1681 SLIPIAAGFGMSGFFGGMACCLG 1703
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 24.2 bits (50), Expect = 7.6
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -3
Query: 218 HGLAKCPSTVDRSGLCFRCGQSGHKAATCT 129
H +CP T C CG GH AA C+
Sbjct: 116 HISVRCPWTKK----CMNCGLLGHIAARCS 141
>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 196
Score = 23.8 bits (49), Expect = 10.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = +3
Query: 180 AAVDSRRAFSEAMPSTEAPE 239
+++DS++ F P T+APE
Sbjct: 134 SSIDSKKDFKYNFPKTQAPE 153
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 23.8 bits (49), Expect = 10.0
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 365 PVQAAILPATPPSGKPAXTPGRLR 294
P AA LPA+PP G T LR
Sbjct: 628 PSPAASLPASPPVGTELKTRPTLR 651
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 23.8 bits (49), Expect = 10.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 321 ACXHAWKAARRLDHGSGATTGGKTLAMPPVLRY 223
AC +A+ +R S AT GKT P ++Y
Sbjct: 37 ACLNAFDEGKRRIAVSLATGSGKTALFPHFIKY 69
>SPAP27G11.03 |||D123 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 319
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +2
Query: 332 EVWLEEWPPARGTAPMRCGLRSK 400
E+ L+EW P + RC ++SK
Sbjct: 160 ELVLKEWFPMHASTEFRCFVKSK 182
>SPAC2F3.02 |||ER protein translocation subcomplex
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/29 (31%), Positives = 13/29 (44%)
Frame = +2
Query: 119 AERRCRWQPCARTDRNGNTIRCGRQSTGI 205
A RC W+P T + + C R + I
Sbjct: 92 ALNRCTWEPSILTREEASVMLCNRAAAEI 120
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 23.8 bits (49), Expect = 10.0
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 199 RRLSTAADCVSVAVSPGTRLPP 134
R+L+ AA VAV+P + LPP
Sbjct: 191 RKLAAAAKKNKVAVTPQSTLPP 212
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 23.8 bits (49), Expect = 10.0
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +3
Query: 156 LTATETQSAAVDSRRAFSEAMPSTEAPEASPRSCLL*LHLS 278
++ TE+ ++DSRR+F + S+ S S L HLS
Sbjct: 513 VSPTESTRQSLDSRRSFEHSTSSSSGISPSHSSASL-AHLS 552
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 23.8 bits (49), Expect = 10.0
Identities = 12/29 (41%), Positives = 14/29 (48%)
Frame = -3
Query: 344 PATPPSGKPAXTPGRLRVGWIMAQVQLQE 258
P TPPS P +PG L + Q QE
Sbjct: 62 PETPPSLPPPPSPGILATSPAVLQKHQQE 90
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,720
Number of Sequences: 5004
Number of extensions: 33144
Number of successful extensions: 120
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -