Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1513
(400 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 43 7e-05
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 43 7e-05
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 43 7e-05
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 43 7e-05
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 43 7e-05
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 43 7e-05
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 37 0.005
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 33 0.100
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 33 0.100
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 33 0.100
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 33 0.100
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 31 0.30
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 31 0.30
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 31 0.30
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 31 0.30
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 31 0.30
Z66516-9|CAN99713.1| 455|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z66516-8|CAB60308.2| 459|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z50015-2|CAN99700.1| 455|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z50015-1|CAB60292.2| 459|Caenorhabditis elegans Hypothetical pr... 29 1.2
U40937-1|AAA81693.1| 396|Caenorhabditis elegans Collagen protei... 29 1.2
L39212-1|AAC37255.1| 459|Caenorhabditis elegans transcription f... 29 1.2
AL021172-3|CAN99704.1| 455|Caenorhabditis elegans Hypothetical ... 29 1.2
AL021172-2|CAB60307.2| 459|Caenorhabditis elegans Hypothetical ... 29 1.2
AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical ... 29 1.2
U58745-2|AAU05593.1| 569|Caenorhabditis elegans Hypothetical pr... 29 1.6
U58745-1|AAB00620.2| 574|Caenorhabditis elegans Hypothetical pr... 29 1.6
AF047653-6|AAC04462.2| 463|Caenorhabditis elegans Hypothetical ... 28 2.1
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 28 2.1
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 28 2.8
AL110490-16|CAB54451.2| 922|Caenorhabditis elegans Hypothetical... 28 2.8
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 28 2.8
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 27 3.7
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 27 3.7
AF003137-7|AAN84856.1| 433|Caenorhabditis elegans Hypothetical ... 27 3.7
AF003137-6|AAB93644.1| 497|Caenorhabditis elegans Hypothetical ... 27 3.7
U29535-3|AAK31458.1| 556|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z82062-2|CAB04890.1| 489|Caenorhabditis elegans Hypothetical pr... 27 6.5
Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical p... 27 6.5
Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical p... 26 8.7
Z82264-8|CAB05153.1| 706|Caenorhabditis elegans Hypothetical pr... 26 8.7
AL110480-1|CAB60325.2| 437|Caenorhabditis elegans Hypothetical ... 26 8.7
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 43.2 bits (97), Expect = 7e-05
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -3
Query: 263 QEARPWRCLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATC 132
+E P +C C G GH A+CP R CF CG+ GH++ C
Sbjct: 237 EERGPMKCFNCKGEGHRSAECPEP-PRG--CFNCGEQGHRSNEC 277
Score = 31.5 bits (68), Expect = 0.23
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPST-VDRSG-LCFRCGQSGHKAATCT 129
C C GH + CP +R +C+ C Q GH + CT
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECT 199
Score = 27.1 bits (57), Expect = 5.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 188 DRSGLCFRCGQSGHKAATC 132
+R+ CF C Q GH+++ C
Sbjct: 155 ERNNNCFNCQQPGHRSSDC 173
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Frame = -3
Query: 173 CFRCGQSGHKAATCTAVPH-CVLC 105
CF C GH++A C P C C
Sbjct: 244 CFNCKGEGHRSAECPEPPRGCFNC 267
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 43.2 bits (97), Expect = 7e-05
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -3
Query: 263 QEARPWRCLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATC 132
+E P +C C G GH A+CP R CF CG+ GH++ C
Sbjct: 448 EERGPMKCFNCKGEGHRSAECPEP-PRG--CFNCGEQGHRSNEC 488
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSG--LCFRCGQSGHKAATC 132
C C GH CP +C+ C Q GH + C
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 297
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSG--LCFRCGQSGHKAATC 132
C C GH CP +C+ C Q GH + C
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 411
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Frame = -3
Query: 173 CFRCGQSGHKAATCTAVPH-CVLC 105
CF C GH++A C P C C
Sbjct: 455 CFNCKGEGHRSAECPEPPRGCFNC 478
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 43.2 bits (97), Expect = 7e-05
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -3
Query: 263 QEARPWRCLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATC 132
+E P +C C G GH A+CP R CF CG+ GH++ C
Sbjct: 448 EERGPMKCFNCKGEGHRSAECPEP-PRG--CFNCGEQGHRSNEC 488
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSG--LCFRCGQSGHKAATC 132
C C GH CP +C+ C Q GH + C
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 297
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSG--LCFRCGQSGHKAATC 132
C C GH CP +C+ C Q GH + C
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 411
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Frame = -3
Query: 173 CFRCGQSGHKAATCTAVPH-CVLC 105
CF C GH++A C P C C
Sbjct: 455 CFNCKGEGHRSAECPEPPRGCFNC 478
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 43.2 bits (97), Expect = 7e-05
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -3
Query: 263 QEARPWRCLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATC 132
+E P +C C G GH A+CP R CF CG+ GH++ C
Sbjct: 237 EERGPMKCFNCKGEGHRSAECPEP-PRG--CFNCGEQGHRSNEC 277
Score = 31.5 bits (68), Expect = 0.23
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPST-VDRSG-LCFRCGQSGHKAATCT 129
C C GH + CP +R +C+ C Q GH + CT
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECT 199
Score = 27.1 bits (57), Expect = 5.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 188 DRSGLCFRCGQSGHKAATC 132
+R+ CF C Q GH+++ C
Sbjct: 155 ERNNNCFNCQQPGHRSSDC 173
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Frame = -3
Query: 173 CFRCGQSGHKAATCTAVPH-CVLC 105
CF C GH++A C P C C
Sbjct: 244 CFNCKGEGHRSAECPEPPRGCFNC 267
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 43.2 bits (97), Expect = 7e-05
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -3
Query: 263 QEARPWRCLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATC 132
+E P +C C G GH A+CP R CF CG+ GH++ C
Sbjct: 237 EERGPMKCFNCKGEGHRSAECPEP-PRG--CFNCGEQGHRSNEC 277
Score = 31.5 bits (68), Expect = 0.23
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPST-VDRSG-LCFRCGQSGHKAATCT 129
C C GH + CP +R +C+ C Q GH + CT
Sbjct: 160 CFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECT 199
Score = 27.1 bits (57), Expect = 5.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -3
Query: 188 DRSGLCFRCGQSGHKAATC 132
+R+ CF C Q GH+++ C
Sbjct: 155 ERNNNCFNCQQPGHRSSDC 173
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Frame = -3
Query: 173 CFRCGQSGHKAATCTAVPH-CVLC 105
CF C GH++A C P C C
Sbjct: 244 CFNCKGEGHRSAECPEPPRGCFNC 267
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 43.2 bits (97), Expect = 7e-05
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = -3
Query: 263 QEARPWRCLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATC 132
+E P +C C G GH A+CP R CF CG+ GH++ C
Sbjct: 448 EERGPMKCFNCKGEGHRSAECPEP-PRG--CFNCGEQGHRSNEC 488
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSG--LCFRCGQSGHKAATC 132
C C GH CP +C+ C Q GH + C
Sbjct: 259 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 297
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSG--LCFRCGQSGHKAATC 132
C C GH CP +C+ C Q GH + C
Sbjct: 373 CFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDC 411
Score = 26.2 bits (55), Expect = 8.7
Identities = 10/24 (41%), Positives = 12/24 (50%), Gaps = 1/24 (4%)
Frame = -3
Query: 173 CFRCGQSGHKAATCTAVPH-CVLC 105
CF C GH++A C P C C
Sbjct: 455 CFNCKGEGHRSAECPEPPRGCFNC 478
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 37.1 bits (82), Expect = 0.005
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRS--GLCFRCGQSGHKAATC 132
C C GH LA CP S G+CF+CG H C
Sbjct: 231 CFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHEC 269
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 32.7 bits (71), Expect = 0.100
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -3
Query: 245 RCLRC--FGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATC 132
RC RC F T H CP+ + +C+ CG H ++ C
Sbjct: 112 RCFRCGKFAT-HKAKSCPNVKTDAKVCYTCGSEEHVSSIC 150
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 32.7 bits (71), Expect = 0.100
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -3
Query: 245 RCLRC--FGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATC 132
RC RC F T H CP+ + +C+ CG H ++ C
Sbjct: 143 RCFRCGKFAT-HKAKSCPNVKTDAKVCYTCGSEEHVSSIC 181
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 32.7 bits (71), Expect = 0.100
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -3
Query: 245 RCLRC--FGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATC 132
RC RC F T H CP+ + +C+ CG H ++ C
Sbjct: 143 RCFRCGKFAT-HKAKSCPNVKTDAKVCYTCGSEEHVSSIC 181
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 32.7 bits (71), Expect = 0.100
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -3
Query: 245 RCLRC--FGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATC 132
RC RC F T H CP+ + +C+ CG H ++ C
Sbjct: 143 RCFRCGKFAT-HKAKSCPNVKTDAKVCYTCGSEEHVSSIC 181
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 31.1 bits (67), Expect = 0.30
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 245 RCLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATC 132
+C C +G +A C +R+ CFRC + GH A C
Sbjct: 655 KCDECQQSGWHMASCFKLKNRA--CFRCNEMGHIAWNC 690
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 31.1 bits (67), Expect = 0.30
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 245 RCLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATC 132
+C C +G +A C +R+ CFRC + GH A C
Sbjct: 558 KCDECQQSGWHMASCFKLKNRA--CFRCNEMGHIAWNC 593
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 31.1 bits (67), Expect = 0.30
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -3
Query: 245 RCLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATC 132
+C C +G +A C +R+ CFRC + GH A C
Sbjct: 569 KCDECQQSGWHMASCFKLKNRA--CFRCNEMGHIAWNC 604
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 31.1 bits (67), Expect = 0.30
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATC 132
C C GH C G C CGQ GH A C
Sbjct: 618 CRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDC 654
Score = 29.1 bits (62), Expect = 1.2
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATC 132
C C GH + C G C CG GH A C
Sbjct: 595 CRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDC 631
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 31.1 bits (67), Expect = 0.30
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATC 132
C C GH C G C CGQ GH A C
Sbjct: 618 CRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDC 654
Score = 29.1 bits (62), Expect = 1.2
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATC 132
C C GH + C G C CG GH A C
Sbjct: 595 CRNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDC 631
>Z66516-9|CAN99713.1| 455|Caenorhabditis elegans Hypothetical
protein W03C9.4b protein.
Length = 455
Score = 29.1 bits (62), Expect = 1.2
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -3
Query: 293 VGWIMAQVQLQEARPWRCLRC 231
VG + Q+Q++EA+P++C +C
Sbjct: 132 VGVLQQQMQMREAKPYKCTQC 152
>Z66516-8|CAB60308.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 29.1 bits (62), Expect = 1.2
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -3
Query: 293 VGWIMAQVQLQEARPWRCLRC 231
VG + Q+Q++EA+P++C +C
Sbjct: 136 VGVLQQQMQMREAKPYKCTQC 156
>Z50015-2|CAN99700.1| 455|Caenorhabditis elegans Hypothetical
protein W03C9.4b protein.
Length = 455
Score = 29.1 bits (62), Expect = 1.2
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -3
Query: 293 VGWIMAQVQLQEARPWRCLRC 231
VG + Q+Q++EA+P++C +C
Sbjct: 132 VGVLQQQMQMREAKPYKCTQC 152
>Z50015-1|CAB60292.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 29.1 bits (62), Expect = 1.2
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -3
Query: 293 VGWIMAQVQLQEARPWRCLRC 231
VG + Q+Q++EA+P++C +C
Sbjct: 136 VGVLQQQMQMREAKPYKCTQC 156
>U40937-1|AAA81693.1| 396|Caenorhabditis elegans Collagen protein
164 protein.
Length = 396
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 96 RRITKYTVRNGGAGGSLVPGLTATETQSAAVD 191
RR+ + T + GGA G P TA E +D
Sbjct: 70 RRVARQTYKEGGAAGEGSPAATAPEASPVKID 101
>L39212-1|AAC37255.1| 459|Caenorhabditis elegans transcription
factor protein.
Length = 459
Score = 29.1 bits (62), Expect = 1.2
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -3
Query: 293 VGWIMAQVQLQEARPWRCLRC 231
VG + Q+Q++EA+P++C +C
Sbjct: 136 VGVLQQQMQMREAKPYKCTQC 156
>AL021172-3|CAN99704.1| 455|Caenorhabditis elegans Hypothetical
protein W03C9.4b protein.
Length = 455
Score = 29.1 bits (62), Expect = 1.2
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -3
Query: 293 VGWIMAQVQLQEARPWRCLRC 231
VG + Q+Q++EA+P++C +C
Sbjct: 132 VGVLQQQMQMREAKPYKCTQC 152
>AL021172-2|CAB60307.2| 459|Caenorhabditis elegans Hypothetical
protein W03C9.4a protein.
Length = 459
Score = 29.1 bits (62), Expect = 1.2
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = -3
Query: 293 VGWIMAQVQLQEARPWRCLRC 231
VG + Q+Q++EA+P++C +C
Sbjct: 136 VGVLQQQMQMREAKPYKCTQC 156
>AF025471-8|AAB71060.1| 1019|Caenorhabditis elegans Hypothetical
protein R52.2 protein.
Length = 1019
Score = 29.1 bits (62), Expect = 1.2
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 179 GLCFRCGQSGHKAATCTAVPHCVLC 105
GLCF C +SGH+ + C+ C C
Sbjct: 346 GLCFGCLRSGHQRSKCSRPRTCNHC 370
>U58745-2|AAU05593.1| 569|Caenorhabditis elegans Hypothetical
protein C10G6.1b protein.
Length = 569
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 66 PPSPXVGLPLRRITKYTVRNGGA 134
PP P + P R T+ VRNGG+
Sbjct: 508 PPQPFISSPYRASTRRDVRNGGS 530
>U58745-1|AAB00620.2| 574|Caenorhabditis elegans Hypothetical
protein C10G6.1a protein.
Length = 574
Score = 28.7 bits (61), Expect = 1.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 66 PPSPXVGLPLRRITKYTVRNGGA 134
PP P + P R T+ VRNGG+
Sbjct: 513 PPQPFISSPYRASTRRDVRNGGS 535
>AF047653-6|AAC04462.2| 463|Caenorhabditis elegans Hypothetical
protein W02F12.5 protein.
Length = 463
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/46 (30%), Positives = 19/46 (41%)
Frame = +3
Query: 111 YTVRNGGAGGSLVPGLTATETQSAAVDSRRAFSEAMPSTEAPEASP 248
+T+ NGG GS+ QSA + F +P PE P
Sbjct: 379 FTISNGGVFGSMFGTPIINPPQSAILGMHGVFDRVVPVNGKPEIRP 424
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 28.3 bits (60), Expect = 2.1
Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 17/55 (30%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSGL-----------------CFRCGQSGHKAATCT 129
C C G GH CPS G C+ CG+SGH + CT
Sbjct: 69 CYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRSFGGQKCYNCGRSGHISRECT 123
Score = 26.6 bits (56), Expect = 6.5
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 245 RCLRCFGTGHGLAKCPSTVD-RSGLCFRCGQSGHKAATC 132
+C C +GH +C + C++C ++GH + C
Sbjct: 108 KCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDC 146
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 27.9 bits (59), Expect = 2.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 194 TVDRSGLCFRCGQSGHKAATCTAVP 120
T ++ C C + GHKA TC +P
Sbjct: 199 TYSQAITCHNCHERGHKATTCPHLP 223
>AL110490-16|CAB54451.2| 922|Caenorhabditis elegans Hypothetical
protein Y48B6A.11 protein.
Length = 922
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/43 (34%), Positives = 17/43 (39%)
Frame = -3
Query: 329 SGKPAXTPGRLRVGWIMAQVQLQEARPWRCLRCFGTGHGLAKC 201
S P P RL + L E W C+ C T GLA C
Sbjct: 696 SETPRMPPRRLSEEYRAELGDLYENSRWECVVCHRTDEGLAPC 738
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 27.9 bits (59), Expect = 2.8
Identities = 16/37 (43%), Positives = 17/37 (45%)
Frame = -1
Query: 136 PAPPFRTVYFVMRRSGRPTXGLGGQHVVQPPPQRRGG 26
P PPF M S P GG H + PPP RGG
Sbjct: 756 PPPPFGRGAGPM--SSFPPPPRGGMHHMPPPPSFRGG 790
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -3
Query: 182 SGLCFRCGQSGHKAATCTAVP-HCVLC 105
S CF C + GH+A C+A C C
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANC 227
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATCTA 126
C C GH +C S R C CG H+A C +
Sbjct: 204 CFNCKKYGHRATEC-SAPQRE--CANCGDPNHRANECAS 239
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 27.5 bits (58), Expect = 3.7
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
Frame = -3
Query: 182 SGLCFRCGQSGHKAATCTAVP-HCVLC 105
S CF C + GH+A C+A C C
Sbjct: 201 SNTCFNCKKYGHRATECSAPQRECANC 227
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/39 (33%), Positives = 16/39 (41%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATCTA 126
C C GH +C S R C CG H+A C +
Sbjct: 204 CFNCKKYGHRATEC-SAPQRE--CANCGDPNHRANECAS 239
>AF003137-7|AAN84856.1| 433|Caenorhabditis elegans Hypothetical
protein C27A12.7b protein.
Length = 433
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/37 (32%), Positives = 14/37 (37%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATC 132
C R HG + S CF CGQ H+ C
Sbjct: 158 CGRTVKVSHGEPRLVVCTCGSRFCFSCGQDWHEPVNC 194
>AF003137-6|AAB93644.1| 497|Caenorhabditis elegans Hypothetical
protein C27A12.7a protein.
Length = 497
Score = 27.5 bits (58), Expect = 3.7
Identities = 12/37 (32%), Positives = 14/37 (37%)
Frame = -3
Query: 242 CLRCFGTGHGLAKCPSTVDRSGLCFRCGQSGHKAATC 132
C R HG + S CF CGQ H+ C
Sbjct: 222 CGRTVKVSHGEPRLVVCTCGSRFCFSCGQDWHEPVNC 258
>U29535-3|AAK31458.1| 556|Caenorhabditis elegans Hypothetical
protein C25H3.6a protein.
Length = 556
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 214 ASLNARRLSTAADCVSVAVSPGTRLPPAPPFRTV 113
A+ + +R TAA +SV+++PGT AP T+
Sbjct: 206 AAPSIKRTKTAAAALSVSITPGTPTTMAPQTPTM 239
>Z99772-2|CAB16922.2| 2162|Caenorhabditis elegans Hypothetical protein
H05L14.2 protein.
Length = 2162
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = -1
Query: 139 PPAPPFRTVYFVMRRSGRPTXGLGGQHVVQ----PPPQ 38
PP PP R + M+ SG P + G +++ PPPQ
Sbjct: 988 PPLPPPRFLAMPMQFSGHPPPVIMGPPIIRPFGAPPPQ 1025
>Z82062-2|CAB04890.1| 489|Caenorhabditis elegans Hypothetical
protein W02A11.3 protein.
Length = 489
Score = 26.6 bits (56), Expect = 6.5
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 226 VLGMASLNARRLSTAADCVSVAVSPGTRLPPAPP 125
VL MA++ + + AA V+VA + PP PP
Sbjct: 298 VLPMAAVAQQHAAAAAAVVAVAAAAAVPQPPPPP 331
>Z75533-11|CAA99823.2| 2162|Caenorhabditis elegans Hypothetical
protein H05L14.2 protein.
Length = 2162
Score = 26.6 bits (56), Expect = 6.5
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = -1
Query: 139 PPAPPFRTVYFVMRRSGRPTXGLGGQHVVQ----PPPQ 38
PP PP R + M+ SG P + G +++ PPPQ
Sbjct: 988 PPLPPPRFLAMPMQFSGHPPPVIMGPPIIRPFGAPPPQ 1025
>Z98877-16|CAH60800.1| 975|Caenorhabditis elegans Hypothetical
protein Y69H2.10b protein.
Length = 975
Score = 26.2 bits (55), Expect = 8.7
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -3
Query: 368 CPVQAAILPATPPSGKPA 315
CP++A LP P+GKP+
Sbjct: 594 CPIRALCLPNFQPNGKPS 611
>Z82264-8|CAB05153.1| 706|Caenorhabditis elegans Hypothetical
protein C49C3.1 protein.
Length = 706
Score = 26.2 bits (55), Expect = 8.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -2
Query: 339 HTSKWEACXHAWKAA 295
HTSKW C ++W A
Sbjct: 159 HTSKWNRCGNSWNNA 173
>AL110480-1|CAB60325.2| 437|Caenorhabditis elegans Hypothetical
protein Y24F12A.1 protein.
Length = 437
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = -3
Query: 305 GRLRVGWIMAQVQLQEARPWRCLRCFGTGHGLAKCPSTVD 186
GR+ V W + L +A W+ L G L +C S ++
Sbjct: 233 GRMGVFWTTMEYILSDAEEWKVLAVGECGIDLHRCESELE 272
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,374,654
Number of Sequences: 27780
Number of extensions: 239999
Number of successful extensions: 855
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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