Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1512
(550 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 117 1e-27
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 114 7e-27
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 85 5e-18
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 45 8e-06
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 40 2e-04
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 27 2.4
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 26 3.2
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 4.2
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 25 5.6
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 25 5.6
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 25 7.3
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 25 7.3
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 117 bits (281), Expect = 1e-27
Identities = 56/110 (50%), Positives = 73/110 (66%)
Frame = -2
Query: 549 ITNXKGXLSKXEIERMVNEAEKYRNEDXKQKETIXAKNALESYCFSMKSTMXXXXXXXXX 370
ITN KG LSK EI+RMV+EAEKY+ ED + I AKN LESY +S+++++
Sbjct: 501 ITNDKGRLSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHLESYAYSLRNSLDDPNLKDKV 560
Query: 369 XDXDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGICNPIITKMYQ 220
DK+ I +TI+WLD N A K+EYE KQKELEG+ NPI+ K+YQ
Sbjct: 561 DASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPIMAKIYQ 610
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 114 bits (275), Expect = 7e-27
Identities = 55/110 (50%), Positives = 73/110 (66%)
Frame = -2
Query: 549 ITNXKGXLSKXEIERMVNEAEKYRNEDXKQKETIXAKNALESYCFSMKSTMXXXXXXXXX 370
ITN KG LSK EI+RMV EAEKY+ ED + I AKN LESY +S+++++
Sbjct: 501 ITNDKGRLSKEEIDRMVAEAEKYKAEDEAESGRIQAKNHLESYAYSLRNSLDDPNLKDKV 560
Query: 369 XDXDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGICNPIITKMYQ 220
DK+T+ +TI+WLDSN A K+E+E KQKELE + NPI+ K+YQ
Sbjct: 561 DASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPIMAKIYQ 610
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 85.4 bits (202), Expect = 5e-18
Identities = 44/111 (39%), Positives = 65/111 (58%), Gaps = 2/111 (1%)
Frame = -2
Query: 549 ITNXKGXLSKXEIERMVNEAEKYRNEDXKQKETIXAKNALESYCFSMKSTM-XXXXXXXX 373
I N KG LS+ +IERMV EAE++ ED KE I A+N LE+Y +S+K
Sbjct: 531 IKNDKGRLSEEDIERMVKEAEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGK 590
Query: 372 XXDXDKQTILDKCNDTIKWLD-SNQLADKEEYEHKQKELEGICNPIITKMY 223
DKQ +LD D +WL+ + A KEE+E ++++L+ + +PI K+Y
Sbjct: 591 VDPEDKQAVLDAVEDVAEWLEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 44.8 bits (101), Expect = 8e-06
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Frame = -2
Query: 549 ITNXKGXLSKXEIERMVNEAEKYRNEDXKQKETIXAKNALESYCFSMKSTMXXXXXXXXX 370
ITN G LS +I+ M+ A+K++ +D + + AK+ LESY ++++T+
Sbjct: 506 ITNSVGHLSSTKIQEMIENADKFKQQDKDFAKKLEAKSQLESYISNIETTISEPNVMMKL 565
Query: 369 XDXDKQTI---LDKCNDTIKWLDSN 304
DK I L +C ++ D+N
Sbjct: 566 KRGDKSKIEAQLAECMSQLELEDTN 590
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 40.3 bits (90), Expect = 2e-04
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = -2
Query: 528 LSKXEIERMVNEAEKYRNEDXKQKETIXAKNALESYCFSMKSTM 397
L+ EIE MV +AEKYR D +KE I N ES C ++S +
Sbjct: 550 LTDSEIEAMVADAEKYRASDMARKEAIENGNRAESVCTDIESNL 593
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 26.6 bits (56), Expect = 2.4
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 504 MVNEAEKYRNEDXKQKETIXAKNALESYCFSMKST 400
M+++ RN+ KQ TI KNA++ Y S+K T
Sbjct: 247 MLSKLVSSRNKPNKQ--TILTKNAIQDYLVSLKIT 279
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 3.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 212 EESPEVCRASRAEHPEPE 159
EE+P AS EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 25.8 bits (54), Expect = 4.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 537 KGXLSKXEIERMVNEAEKYRN 475
KG LSK E+ER V +A K N
Sbjct: 525 KGTLSKEELERRVYDAAKLAN 545
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 25.4 bits (53), Expect = 5.6
Identities = 20/88 (22%), Positives = 34/88 (38%)
Frame = -2
Query: 501 VNEAEKYRNEDXKQKETIXAKNALESYCFSMKSTMXXXXXXXXXXDXDKQTILDKCNDTI 322
+NE + Y + + Q +T + L S C + S + D + +L C I
Sbjct: 830 INETDNYDDNETTQSDTATSYEQLASVCVNELS--GKNVLFFYFLEDDSEKLLKACQHFI 887
Query: 321 KWLDSNQLADKEEYEHKQKELEGICNPI 238
DS + ++E K + I N I
Sbjct: 888 CVKDSIKRLGDNKFEDKSLRICTIPNSI 915
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 5.6
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 201 RGLLRHPGTSSLLSDCKCLPILSA-CAH 281
R ++ H GT + D CLP SA C H
Sbjct: 122 REVVHHEGTCEICYDEGCLPFFSAECDH 149
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 7.3
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -3
Query: 173 HPEPEVPPPGLEALAPPSRRSIKPTFHTTRKPTCNNHLVTS 51
H +P +L+PPS R++KP H+ P+ + L S
Sbjct: 169 HLRSSMPLVMANSLSPPSSRALKP-IHSLSNPSTASSLEPS 208
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -3
Query: 218 VPEESPEVCRA--SRAEHPEPEVPPPGLEALAPPSRRS 111
V +SP R SR P E P A PPSRR+
Sbjct: 891 VSRDSPRYSRGGYSRGSVPPRETLAPSKGAYVPPSRRN 928
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,676,774
Number of Sequences: 5004
Number of extensions: 30458
Number of successful extensions: 117
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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