Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1509
         (600 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF187730-1|AAG17032.1|  159|Drosophila melanogaster eukaryotic t...   127   1e-29
AY071396-1|AAL49018.1|  159|Drosophila melanogaster RE47768p pro...   125   4e-29
AF159443-1|AAF80375.1|  159|Drosophila melanogaster eukaryotic i...   125   4e-29
AE013599-3794|AAM68297.1|  159|Drosophila melanogaster CG3186-PB...   125   4e-29
AE013599-3793|AAF47151.1|  159|Drosophila melanogaster CG3186-PA...   125   4e-29

>AF187730-1|AAG17032.1|  159|Drosophila melanogaster eukaryotic
           translation initiationfactor 5a protein.
          Length = 159

 Score =  127 bits (306), Expect = 1e-29
 Identities = 57/75 (76%), Positives = 65/75 (86%)
 Frame = -3

Query: 598 VKREDXQXXDXSDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCG 419
           VKRED Q    SDD +LTLM D+GDLREDLK+P+G+LG QLR DFDSGK+LLCTVLK+CG
Sbjct: 85  VKREDLQLIAISDDSFLTLMTDSGDLREDLKVPEGELGEQLRLDFDSGKDLLCTVLKACG 144

Query: 418 EECVIAVKANTALDK 374
           EECVIA+K NTALDK
Sbjct: 145 EECVIAIKTNTALDK 159


>AY071396-1|AAL49018.1|  159|Drosophila melanogaster RE47768p
           protein.
          Length = 159

 Score =  125 bits (302), Expect = 4e-29
 Identities = 56/75 (74%), Positives = 65/75 (86%)
 Frame = -3

Query: 598 VKREDXQXXDXSDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCG 419
           VKRED Q    SDD +LTLM ++GDLREDLK+P+G+LG QLR DFDSGK+LLCTVLK+CG
Sbjct: 85  VKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGELGEQLRLDFDSGKDLLCTVLKACG 144

Query: 418 EECVIAVKANTALDK 374
           EECVIA+K NTALDK
Sbjct: 145 EECVIAIKTNTALDK 159


>AF159443-1|AAF80375.1|  159|Drosophila melanogaster eukaryotic
           initiation factor 5A protein.
          Length = 159

 Score =  125 bits (302), Expect = 4e-29
 Identities = 56/75 (74%), Positives = 65/75 (86%)
 Frame = -3

Query: 598 VKREDXQXXDXSDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCG 419
           VKRED Q    SDD +LTLM ++GDLREDLK+P+G+LG QLR DFDSGK+LLCTVLK+CG
Sbjct: 85  VKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGELGEQLRLDFDSGKDLLCTVLKACG 144

Query: 418 EECVIAVKANTALDK 374
           EECVIA+K NTALDK
Sbjct: 145 EECVIAIKTNTALDK 159


>AE013599-3794|AAM68297.1|  159|Drosophila melanogaster CG3186-PB,
           isoform B protein.
          Length = 159

 Score =  125 bits (302), Expect = 4e-29
 Identities = 56/75 (74%), Positives = 65/75 (86%)
 Frame = -3

Query: 598 VKREDXQXXDXSDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCG 419
           VKRED Q    SDD +LTLM ++GDLREDLK+P+G+LG QLR DFDSGK+LLCTVLK+CG
Sbjct: 85  VKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGELGEQLRLDFDSGKDLLCTVLKACG 144

Query: 418 EECVIAVKANTALDK 374
           EECVIA+K NTALDK
Sbjct: 145 EECVIAIKTNTALDK 159


>AE013599-3793|AAF47151.1|  159|Drosophila melanogaster CG3186-PA,
           isoform A protein.
          Length = 159

 Score =  125 bits (302), Expect = 4e-29
 Identities = 56/75 (74%), Positives = 65/75 (86%)
 Frame = -3

Query: 598 VKREDXQXXDXSDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCG 419
           VKRED Q    SDD +LTLM ++GDLREDLK+P+G+LG QLR DFDSGK+LLCTVLK+CG
Sbjct: 85  VKREDLQLIAISDDSFLTLMTESGDLREDLKVPEGELGEQLRLDFDSGKDLLCTVLKACG 144

Query: 418 EECVIAVKANTALDK 374
           EECVIA+K NTALDK
Sbjct: 145 EECVIAIKTNTALDK 159


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,322,727
Number of Sequences: 53049
Number of extensions: 367038
Number of successful extensions: 980
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2441585082
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)