Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1509
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...    49   2e-06
Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...    46   2e-05
Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U88178-1|AAC24412.1|  296|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    27   7.7  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    27   7.7  

>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 22/61 (36%), Positives = 41/61 (67%), Gaps = 2/61 (3%)
 Frame = -3

Query: 562 DDGYLTLM-ADNGDLREDLKIPDGDLGTQLRTDFDSGK-ELLCTVLKSCGEECVIAVKAN 389
           +DG+ +LM  ++ +L++DLK+P+GDLG  +R   +  +  +L  V+ +CGEE ++  K +
Sbjct: 133 EDGFCSLMDPESCELKDDLKMPEGDLGNTIREALEKDEGSVLVQVVAACGEEAILGYKIS 192

Query: 388 T 386
           T
Sbjct: 193 T 193


>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 2/61 (3%)
 Frame = -3

Query: 562 DDGYLTLM-ADNGDLREDLKIPDGDLGTQLRTDFDSGK-ELLCTVLKSCGEECVIAVKAN 389
           DDGY +LM  ++ + ++DLK+PD +LG Q+R  ++  +  +L  V+ + GEE ++  K +
Sbjct: 99  DDGYCSLMDPESCEQKDDLKLPDTELGQQIRDAYEKDEGSVLVQVVSAIGEEAILGWKVS 158

Query: 388 T 386
           T
Sbjct: 159 T 159


>Z70310-6|CAE17904.1|  293|Caenorhabditis elegans Hypothetical
           protein R11A8.8 protein.
          Length = 293

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 556 GYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLC 440
           GYL      GD ++++K+ +G    Q+ +D D  K   C
Sbjct: 251 GYLPQQPKKGDKKKNIKLKEGRTEHQIVSDIDPAKLRAC 289


>U88178-1|AAC24412.1|  296|Caenorhabditis elegans Hypothetical
           protein W09C3.4 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +3

Query: 393 ALTAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPSGILR 512
           ALT+MT   PQ       NSL  SK +   + ++P G+LR
Sbjct: 33  ALTSMTPGLPQTVRQTAINSLLSSKKL--AIQQAPGGVLR 70


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = -1

Query: 534  TTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 394
            T +TC  T+  + +  ++SC         CC     C NP   +   P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 3/50 (6%)
 Frame = -1

Query: 534  TTVTCVRTSKSRMVTSAHSCVLTSTAARNCCAP---C*NPAVRSASSPSK 394
            T +TC  T+  + +  ++SC         CC     C NP   +   P+K
Sbjct: 1822 TLLTCDPTTVCQQLNMSNSCQTVEPGVSGCCCDTDGCLNPLTNTYPGPAK 1871


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,280,880
Number of Sequences: 27780
Number of extensions: 186554
Number of successful extensions: 490
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)