Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1509
(600 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.3
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 22 5.3
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.3
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 22 5.3
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase... 22 5.3
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 21 9.2
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +3
Query: 447 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 545
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +3
Query: 447 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 545
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +3
Query: 447 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 545
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +3
Query: 447 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 545
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +3
Query: 447 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 545
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.8 bits (44), Expect = 5.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +3
Query: 447 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 545
N L + +R N PSG +RS+ +P+S R
Sbjct: 344 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 378
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +3
Query: 447 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 545
N L + +R N PSG +RS+ +P+S R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.8 bits (44), Expect = 5.3
Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = +3
Query: 447 NSLPLSKSVR--NCVPRSPSGILRSSRRSPLSAIR 545
N L + +R N PSG +RS+ +P+S R
Sbjct: 412 NVLDIDDDIRHKNSAANPPSGYIRSAFGTPISTGR 446
>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
protein.
Length = 1143
Score = 21.8 bits (44), Expect = 5.3
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +2
Query: 392 CFDGDDALLTAGFQHGAQQFLAA 460
C D DD LL G++ AA
Sbjct: 670 CLDDDDTLLEVALSLGSEALSAA 692
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.0 bits (42), Expect = 9.2
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 483 VPRSPSGILRSSRRSPLS 536
VP+S +G+ SSRRS ++
Sbjct: 239 VPKSVAGLNVSSRRSDMN 256
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,086
Number of Sequences: 438
Number of extensions: 2338
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -