Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1508
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    28   1.3  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    27   2.3  

>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
 Frame = -1

Query: 782 KFYTKF*GTTFIHYFYXQTL*VVMSVICVLDLIYIDFIVFGAINFVFPEIIFMYF--VGR 609
           +++ +F GT  I YF      ++   +   + I +  +V GA NFVF  + FM+   +GR
Sbjct: 340 QWFQQFSGTNAIQYFSA----IIFQSVGFKNSISVSIVV-GATNFVFTIVAFMFIDRIGR 394

Query: 608 S--YQCQSLVLL 579
                C S V++
Sbjct: 395 RRILLCTSAVMI 406


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 698  VLDLIYIDFIVFGAINFVFPEIIFMYFVGRSYQC 597
            +LD IY   + FG   FVF    F+ + GR+ +C
Sbjct: 1179 MLDGIYQSLVCFGVALFVFKFGDFVSWTGRNIEC 1212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,797,799
Number of Sequences: 5004
Number of extensions: 52671
Number of successful extensions: 92
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)