Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1508
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical pr...    29   3.9  
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l...    28   6.8  
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p...    28   6.8  

>Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical protein
            ZK270.1 protein.
          Length = 983

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = -2

Query: 367  LNIKEFFIKFLPFCFSLCHLYQLCFL**IYAILGLLNSI 251
            L + E F+K +  C  LC+L+ L FL    AIL LL+SI
Sbjct: 905  LYMAEVFVKTMVLCVVLCNLHGLVFL---PAILILLDSI 940


>Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical protein
            ZK270.1 protein.
          Length = 983

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 18/39 (46%), Positives = 24/39 (61%)
 Frame = -2

Query: 367  LNIKEFFIKFLPFCFSLCHLYQLCFL**IYAILGLLNSI 251
            L + E F+K +  C  LC+L+ L FL    AIL LL+SI
Sbjct: 905  LYMAEVFVKTMVLCVVLCNLHGLVFL---PAILILLDSI 940


>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
            lineage protein 13 protein.
          Length = 2248

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 141  FLVLIMTHLKPTLKLSQLTNSRATVIHEKTRSQK*EGIEFNNPK 272
            FL  I  HLKP     Q  + ++ V H K   +     EF +PK
Sbjct: 1972 FLHYIQVHLKPAYDKHQSNSFKSNVFHLKCPIRSCTSPEFQSPK 2015


>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
            protein LIN-13 protein.
          Length = 2248

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 141  FLVLIMTHLKPTLKLSQLTNSRATVIHEKTRSQK*EGIEFNNPK 272
            FL  I  HLKP     Q  + ++ V H K   +     EF +PK
Sbjct: 1972 FLHYIQVHLKPAYDKHQSNSFKSNVFHLKCPIRSCTSPEFQSPK 2015


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,059,805
Number of Sequences: 27780
Number of extensions: 283020
Number of successful extensions: 570
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)