Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1507
         (450 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    28   0.76 
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    27   1.0  
SPAC23A1.04c |mnl1||alpha mannosidase-like protein|Schizosacchar...    27   1.3  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   1.8  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    25   4.1  
SPAC7D4.06c |alg3||dolichol-P-Man dependent alpha|Schizosaccharo...    25   7.1  
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    24   9.4  
SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr 2|||M...    24   9.4  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 27.9 bits (59), Expect = 0.76
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 342 PIEKVVPYPVV-KHIPYPVEKHVPIKVEKTVTVHVPQPY 229
           P E+ +P  +V K+IP+ ++K V  KV     + +P+PY
Sbjct: 225 PDEETIPTAIVIKNIPFSLKKEVLFKV--FTALDIPRPY 261


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -3

Query: 196 SQRPLSRWMFPYVPCKYLLINFKSFSTVRH 107
           S+  LSRW++P+VP   LL   ++FS  RH
Sbjct: 284 SKDVLSRWVYPFVPDSNLL--NQTFSYQRH 311


>SPAC23A1.04c |mnl1||alpha mannosidase-like
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 787

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 211 VQNHPSQRPLSRWMFPYVPCKYLLINFKSF 122
           ++N  SQ  L  W+ PY+P   LL N  +F
Sbjct: 721 LENIHSQNSLFNWVKPYIPPTILLKNENNF 750


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 21  NKIIYNNKQKQTVYNNNNKLFTINKSTT 104
           NK  YNN   Q   NNNN+ +  N +++
Sbjct: 609 NKQNYNNNNNQNYGNNNNQNYNNNNNSS 636


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 202 GFVHRNLNWVRLGYVYRYGLFDFDGHVFL 288
           G + R LNW+ LGY++   + +   + FL
Sbjct: 215 GTLLRFLNWIPLGYIFETNIVELITNRFL 243


>SPAC7D4.06c |alg3||dolichol-P-Man dependent
           alpha|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 406

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +1

Query: 274 GHVFLYRIRYMLHDWVGYNLFYWNXXFG-LNWXSDGLVHGY 393
           GHVFLY + Y L D  G N+      F  + W +  +V GY
Sbjct: 84  GHVFLYTLLYYLTDG-GTNIVRAQYIFAFVYWITTAIV-GY 122


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 333 KVVPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQ 235
           K VP+ + K++P  ++    +  E T+ ++ PQ
Sbjct: 476 KDVPWSITKYLPQALQHSGYLIAEDTLQINTPQ 508


>SPBC13G1.04c |||alkB homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 196 MDGFVHRNLNWVRLGYVY 249
           +D  VH+ L WV LG  Y
Sbjct: 127 VDRLVHKKLRWVTLGEQY 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,479,748
Number of Sequences: 5004
Number of extensions: 30357
Number of successful extensions: 70
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)