Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1507
         (450 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733     28   3.0  
07_03_1157 - 24419157-24419948                                         28   4.0  
05_01_0131 + 888247-888771,889092-889154                               28   4.0  
06_03_0434 + 20725996-20726026,20726300-20726947,20727168-207272...    27   5.3  
12_01_0978 + 9908001-9908175,9908538-9908619,9910793-9910904,991...    27   9.2  
11_04_0339 - 16527602-16527742,16528622-16528800,16529617-165296...    27   9.2  
06_01_0486 - 3455030-3455770                                           27   9.2  

>04_04_0662 - 27051508-27051828,27051878-27053438,27054333-27054733
          Length = 760

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 333 KVVPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYP 226
           +V P   V  +P PV+   P  V++    H PQP P
Sbjct: 386 QVPPAATVIQMPTPVQLQTPPPVKQPARQHQPQPTP 421


>07_03_1157 - 24419157-24419948
          Length = 263

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = -1

Query: 342 PIEKVVPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYPV 223
           P  +  P+P V  +P+P    +P      +  H   P+PV
Sbjct: 133 PKHEEPPHPAVPELPHPAVPEIPHPAVPELPKHEEPPHPV 172



 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -1

Query: 345 IPIEKVVPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYPVKIPVYK 205
           +P  +  P+PVV  +P P E H P +V +      P+ +  ++P+ K
Sbjct: 217 LPKHEEPPHPVVPELPKPEEPHHP-EVPEHEQPPKPESHYPEVPMAK 262


>05_01_0131 + 888247-888771,889092-889154
          Length = 195

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 342 PIEKVVPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYPV-KIPVYKTIHHK 190
           PI    P P      +PV + VP   +   +   P P P+ + P+ + +HHK
Sbjct: 128 PITSDPPPPPPPLSEFPVLREVPSGPDPITSDPPPPPPPLTEFPILRKVHHK 179


>06_03_0434 +
           20725996-20726026,20726300-20726947,20727168-20727230,
           20727300-20727458,20727750-20728247,20729068-20729321,
           20729448-20729829,20729938-20730204,20730530-20730789
          Length = 853

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = -3

Query: 214 CVQNHPSQRPLSRWMFPYVPCKYLLINF 131
           C +N PS +  +RW+ PY P  YLL  F
Sbjct: 669 CTKNRPSCKNDNRWVVPYNP--YLLRMF 694


>12_01_0978 +
           9908001-9908175,9908538-9908619,9910793-9910904,
           9911965-9913737
          Length = 713

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/39 (41%), Positives = 19/39 (48%)
 Frame = +3

Query: 42  KQKQTVYNNNNKLFTINKSTTT*RTVENDLKLINKYLQG 158
           K K+TV +  NKL  INKS         D K   K L+G
Sbjct: 162 KAKKTVEDLTNKLDAINKSKELAIQATEDAKTRTKQLEG 200


>11_04_0339 -
           16527602-16527742,16528622-16528800,16529617-16529680,
           16530357-16530475,16530560-16530686,16530937-16531149,
           16531462-16531500
          Length = 293

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 265 RKDRNGTRTPALPS*DSCVQNHPSQRP 185
           RK+ + T+ P +   D+C+ N+P  RP
Sbjct: 211 RKEWSPTKCPRILLADTCIVNNPDDRP 237


>06_01_0486 - 3455030-3455770
          Length = 246

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
 Frame = -1

Query: 342 PIEKVVPYP---VVKHIPYPVEKHVPIKVEKTVTVHVPQPYPVKIPVY 208
           P    VP P   V  +IP P   +VP  +      +VP P P   P Y
Sbjct: 88  PTPPYVPSPPPYVPPYIPPPTPPYVPPYIPPPTPPYVPPPTPPSPPPY 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,849,807
Number of Sequences: 37544
Number of extensions: 177149
Number of successful extensions: 453
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)