Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1507
         (450 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical prot...    53   5e-09
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            28   0.18 
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   6.6  
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    23   6.6  

>AJ439060-16|CAD27767.1|  278|Anopheles gambiae hypothetical protein
           protein.
          Length = 278

 Score = 52.8 bits (121), Expect = 5e-09
 Identities = 26/47 (55%), Positives = 30/47 (63%)
 Frame = -1

Query: 339 IEKVVPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYPVKIPVYKTI 199
           IEK VPY V K  P  VEK  P++V K   V VP+PYPV + VYK I
Sbjct: 220 IEKPVPYTVEKPYPIEVEKPFPVEVLKKFEVPVPKPYPVPVTVYKHI 266



 Score = 46.0 bits (104), Expect = 6e-07
 Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
 Frame = -1

Query: 333 KVVPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYP--------VKIPVYKTI 199
           K VP PV + +  PV   VPI V   V V++PQPYP        +KIP+YK I
Sbjct: 164 KTVPVPVFQKVGVPVPHPVPIAVPHYVKVYIPQPYPLQVNVEQPIKIPIYKVI 216



 Score = 40.3 bits (90), Expect = 3e-05
 Identities = 16/43 (37%), Positives = 27/43 (62%)
 Frame = -1

Query: 345 IPIEKVVPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYPVKI 217
           + +E+ +  P+ K IP  +EK VP  VEK   + V +P+PV++
Sbjct: 202 VNVEQPIKIPIYKVIPKVIEKPVPYTVEKPYPIEVEKPFPVEV 244



 Score = 29.5 bits (63), Expect = 0.057
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 285 KHVPIKVEKTVTVHVPQPYPVKIPVYKTIH 196
           K VP+ V + V V VP P P+ +P Y  ++
Sbjct: 164 KTVPVPVFQKVGVPVPHPVPIAVPHYVKVY 193



 Score = 25.8 bits (54), Expect = 0.71
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 14/56 (25%)
 Frame = -1

Query: 342 PIEKVVPYPVVKHI--PYPVEKHV--PIK----------VEKTVTVHVPQPYPVKI 217
           P+   VP+ V  +I  PYP++ +V  PIK          +EK V   V +PYP+++
Sbjct: 181 PVPIAVPHYVKVYIPQPYPLQVNVEQPIKIPIYKVIPKVIEKPVPYTVEKPYPIEV 236


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 27.9 bits (59), Expect = 0.18
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -1

Query: 342 PIEKVVPYPVVKHIPYPVEKHVPI 271
           P+  +VPYP++  +P P+   +P+
Sbjct: 625 PVTILVPYPIIIPLPLPIPVPIPV 648



 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -1

Query: 279 VPIKVEKTVTVHVPQPYPVKIPV 211
           V I V   + + +P P PV IPV
Sbjct: 626 VTILVPYPIIIPLPLPIPVPIPV 648


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -1

Query: 246 HVPQPYPVKIPVYKTIHH 193
           H+P+   ++ P+Y+ +HH
Sbjct: 347 HLPKLLVMRRPIYQPLHH 364


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 9/16 (56%), Positives = 14/16 (87%)
 Frame = -2

Query: 53   LFLFVVINDFVEKKKK 6
            LF+ V+I++F E+KKK
Sbjct: 1558 LFIGVIIDNFNEQKKK 1573


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 372,445
Number of Sequences: 2352
Number of extensions: 7513
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 38268990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)