Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1507
         (450 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical...    41   4e-04
U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical pr...    34   0.042
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    33   0.096
AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical...    31   0.39 
AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical...    31   0.39 
AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical ...    31   0.39 
AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical ...    31   0.39 
Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical pr...    31   0.51 
Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    28   2.7  
U41549-1|AAA83281.1|  299|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine re...    28   3.6  
Z74030-7|CAA98447.2|  559|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>AF016448-12|AAB65959.1|  316|Caenorhabditis elegans Hypothetical
           protein F41E6.11 protein.
          Length = 316

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 19/41 (46%), Positives = 24/41 (58%)
 Frame = -1

Query: 330 VVPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYPVKIPVY 208
           V P PV++H+P PV   VP+ +   V V VP P PV  P Y
Sbjct: 147 VAPQPVIQHVPVPVPVQVPVPIR--VPVPVPVPTPVYQPTY 185



 Score = 30.7 bits (66), Expect = 0.51
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = -1

Query: 342 PIEKVVPYPVVKHIPYPVEKHVPIKV-----EKTVTVHVPQPYPVKIPVY 208
           P+ + VP PV   +P P+   VP+ V     + T     P P P   PVY
Sbjct: 151 PVIQHVPVPVPVQVPVPIRVPVPVPVPTPVYQPTYCAVPPCPAPAATPVY 200



 Score = 26.6 bits (56), Expect = 8.3
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -1

Query: 345 IPIEKVVPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYPVKIPVY 208
           +PI   VP PV   +  P    VP       T    QP P  +PVY
Sbjct: 166 VPIRVPVPVPVPTPVYQPTYCAVPPCPAPAATPVYAQPAPRPMPVY 211


>U46675-2|AAB52644.1|  125|Caenorhabditis elegans Hypothetical
           protein F35A5.5 protein.
          Length = 125

 Score = 34.3 bits (75), Expect = 0.042
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 327 VPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYPVKIPV 211
           +P P    +P PV + VP+ +   + + +P P PV +PV
Sbjct: 7   IPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPVPV 45



 Score = 32.3 bits (70), Expect = 0.17
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 327 VPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYPVKIPV 211
           +P P+   +P P     P+ V   + + +P P PV +PV
Sbjct: 5   IPIPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPV 43



 Score = 31.5 bits (68), Expect = 0.29
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 345 IPIEKVVPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYPVK 220
           IPI    P PV   +P PV   +P+ +   + + VP P PV+
Sbjct: 5   IPIPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPVPVQ 46



 Score = 29.5 bits (63), Expect = 1.2
 Identities = 16/62 (25%), Positives = 29/62 (46%)
 Frame = -1

Query: 327 VPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYPVKIPVYKTIHHKGX*AVGCSLMCLVN 148
           +P P+   IP PV    P+     V + +P P P+ +PV   +  +      C  +C+ +
Sbjct: 1   MPPPIPIPIPAPVPVPAPVPQPVPVPMPMPMPMPMPMPVPVPVPVQSNCCSCCMPVCM-S 59

Query: 147 IC 142
           +C
Sbjct: 60  VC 61


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 33.1 bits (72), Expect = 0.096
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -1

Query: 345 IPIEKVVPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYPVKIPVYK 205
           +PI K +P+P  K +P P+ KH P    K +    P P P  +P  K
Sbjct: 205 MPIPKPMPFP--KPMPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPK 249



 Score = 32.3 bits (70), Expect = 0.17
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 345 IPIEKVVPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYPVKIP 214
           +P  K +P P+ KH P P  K  P+   K + +  P P+P  +P
Sbjct: 211 MPFPKPMPKPMPKHKPKPFPK--PMLFPKPMPIPKPMPFPKPMP 252



 Score = 31.5 bits (68), Expect = 0.29
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 345 IPIEKVVPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYPVKIPVYK 205
           +P  K  P+P     P P+ KH P    K +    P P+P  +P  K
Sbjct: 51  MPKHKPKPFPKPMLFPKPMPKHKPKPFPKPMLFPKPMPFPKPMPKSK 97



 Score = 29.9 bits (64), Expect = 0.89
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -1

Query: 345 IPIEKVVPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYPVKIP 214
           +P  K  P P+ KH P P  K  P+   K + +  P P+P  +P
Sbjct: 177 MPKPKPKPKPMPKHKPKPFPK--PMLFPKPMPIPKPMPFPKPMP 218



 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -1

Query: 345 IPIEKVVPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYPVKIPVYK 205
           +P  K +P P  K  P P+ KH P    K +    P P P  +P  K
Sbjct: 171 MPFPKPMPKPKPK--PKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPK 215



 Score = 27.1 bits (57), Expect = 6.3
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 345 IPIEKVVPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYPVKIPVYK 205
           +PI K +P+P     P P+    P+   K  +   P P P   P+ K
Sbjct: 133 MPIPKPMPFPKPMLFPKPMPFPKPMPKSKPKSEPFPNPMPFPKPMPK 179



 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -1

Query: 345 IPIEKVVPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYPVKIPVYK 205
           +PI K +P+P     P P  K +P    K      P P+P   P  K
Sbjct: 239 MPIPKPMPFPKPMPKPKPKPKPMPKPKPKLKLKPKPMPFPKPKPKLK 285


>AF000263-12|AAO21392.1|  838|Caenorhabditis elegans Hypothetical
           protein T08B2.5f protein.
          Length = 838

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -3

Query: 400 SQNTREQARRXAS*DRNXYSNRKGCTLPSREAYTVSCRETRAHQSRKDRNGTRTPALPS 224
           S +   +ARR  S  R+    R     PSR   +   R+ R+ + R+DR+ +R+ + PS
Sbjct: 23  SPSWAREARRSRSRSRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPS 81


>AF000263-11|AAL77184.1|  866|Caenorhabditis elegans Hypothetical
           protein T08B2.5c protein.
          Length = 866

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -3

Query: 400 SQNTREQARRXAS*DRNXYSNRKGCTLPSREAYTVSCRETRAHQSRKDRNGTRTPALPS 224
           S +   +ARR  S  R+    R     PSR   +   R+ R+ + R+DR+ +R+ + PS
Sbjct: 51  SPSWAREARRSRSRSRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPS 109


>AF000263-8|AAK21461.1|  924|Caenorhabditis elegans Hypothetical
           protein T08B2.5a protein.
          Length = 924

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -3

Query: 400 SQNTREQARRXAS*DRNXYSNRKGCTLPSREAYTVSCRETRAHQSRKDRNGTRTPALPS 224
           S +   +ARR  S  R+    R     PSR   +   R+ R+ + R+DR+ +R+ + PS
Sbjct: 109 SPSWAREARRSRSRSRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPS 167


>AF000263-7|AAK21463.1|  925|Caenorhabditis elegans Hypothetical
           protein T08B2.5b protein.
          Length = 925

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = -3

Query: 400 SQNTREQARRXAS*DRNXYSNRKGCTLPSREAYTVSCRETRAHQSRKDRNGTRTPALPS 224
           S +   +ARR  S  R+    R     PSR   +   R+ R+ + R+DR+ +R+ + PS
Sbjct: 110 SPSWAREARRSRSRSRDRRGGRSRSRSPSRRRTSRDRRDDRSSRRRRDRSHSRSRSPPS 168


>Z69658-1|CAA93481.1|  418|Caenorhabditis elegans Hypothetical
           protein C36H8.1 protein.
          Length = 418

 Score = 30.7 bits (66), Expect = 0.51
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = -1

Query: 342 PIEKVVPYPVVKHIPYPVEKHVPIKVEKTVTVHVPQPYPVKIP 214
           P+E+  P P    +P PVEK  P  V   V    P P PV+ P
Sbjct: 190 PVEQAAPPPPPAPMPVPVEK-APEPVPAPVEQIAPPPAPVQDP 231


>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
 Frame = -3

Query: 412 PTXSSQNTREQARRXAS*DRNXYSNRKGCTLPSREAYTVSCRETRA-HQSRKDRNGTRTP 236
           PT   ++T + ARR      + +    G  +  RE        T   H  R  RNG   P
Sbjct: 73  PTEDQEDTNDHARRRR---HHNHEGHHGNDMKHRENMDRKKHGTHVDHHGRVRRNGDHDP 129

Query: 235 ALPS*DSCVQNHPSQRPL 182
             P+ D    NH  +R +
Sbjct: 130 NDPNVDHTGHNHRVKRSI 147


>U41549-1|AAA83281.1|  299|Caenorhabditis elegans Hypothetical
           protein F22F1.2 protein.
          Length = 299

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 316 SREAYTVSCRETRAHQSRKDRNGTRTPALPS*DSCV 209
           S + + +S  +    +S KD NG RTP +P    C+
Sbjct: 145 SNKTFMLSLVDFGLSRSFKDHNGNRTPPIPFPSGCI 180


>Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical
           protein T09F5.8 protein.
          Length = 336

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
 Frame = +1

Query: 244 VYRYGLFDFDGHVF-----LYRIRY-MLH-DWVGYNLFYWNXXFGL 360
           +Y  G+F F  H+F     L+R    M H  WV +NL +WN    L
Sbjct: 16  LYTIGMFSFPIHLFGAYCILFRTSIAMKHVKWVMFNLHFWNSWMDL 61


>AF077542-4|AAU20829.1|  315|Caenorhabditis elegans Serpentine
           receptor, class z protein63 protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +1

Query: 196 MDGFVHRNLNWVRL-----GYVYRYGLFDFDGHVFLYRIRYMLHDWVGYNL 333
           +  F H+NL  V L       + RY + D + H  LYRI Y+   + G+N+
Sbjct: 135 VQSFFHKNLKLVYLTLTIKDLIIRYSIGDRNAHKRLYRISYI--TYYGFNV 183


>Z74030-7|CAA98447.2|  559|Caenorhabditis elegans Hypothetical
           protein D1054.9b protein.
          Length = 559

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 240 PQPYPVKIPVYKTIHH 193
           PQP PV+IP ++  HH
Sbjct: 496 PQPQPVQIPYHRQHHH 511


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,123,248
Number of Sequences: 27780
Number of extensions: 170715
Number of successful extensions: 585
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 478
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)