Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1505
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0109 - 14674980-14675004,14675861-14676468                       28   9.1  
08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675     28   9.1  
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565...    28   9.1  

>09_04_0109 - 14674980-14675004,14675861-14676468
          Length = 210

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = -2

Query: 563 VTGSSGLRPPVLTAVSPPPLRR 498
           V  S  LRP V  AVSPPP  R
Sbjct: 34  VAASFALRPMVAAAVSPPPRHR 55


>08_02_0770 - 21018701-21019216,21019246-21019364,21020516-21020675
          Length = 264

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -2

Query: 689 EQLINKVDTE--ISRIATTLQPDIPITVEAREADDTYEAETSGDVTGSSGLRPPVLTAVS 516
           + LI+ +D+E  I R+    QP I   +E  E + T    T  + T +    PP   A +
Sbjct: 86  QTLIDVLDSEWVICRVFKK-QPPIEHWLEMEEVETTTTTTTVQEHTPNRRRLPPAEAAAA 144

Query: 515 PPP 507
           PPP
Sbjct: 145 PPP 147


>03_05_0754 +
           27452203-27452242,27452360-27455611,27456480-27456533,
           27456774-27456872,27456948-27457012,27457476-27457575,
           27458326-27458408,27458494-27458569,27458920-27459698
          Length = 1515

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
 Frame = -3

Query: 622 LLRSKLEKLTTLTRQKRRVTSPARAD*GRRF*QLSVRRHCDAE*RTTNKLVS-INALCDD 446
           L  S  E+   L  +KR + +       RR  Q +  R C  E     +L+S     C +
Sbjct: 110 LRSSARERSDALEAEKRELVAALEESEARRLEQEAAARSCGEEVARLRRLLSEKEKKCSE 169

Query: 445 AVQYTSRPKQVL 410
           A Q    PK+V+
Sbjct: 170 AEQRALAPKEVM 181


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,335,118
Number of Sequences: 37544
Number of extensions: 324014
Number of successful extensions: 898
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)