Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1505
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040661-7|AAG24223.1|  439|Caenorhabditis elegans Hypothetical ...    29   4.7  
Z81097-8|CAL44976.1|  185|Caenorhabditis elegans Hypothetical pr...    28   8.1  
Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>AF040661-7|AAG24223.1|  439|Caenorhabditis elegans Hypothetical
           protein W10G11.17 protein.
          Length = 439

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 496 LRRNGGGLTAVKTGGLSPLEPVTSPD 573
           LRR GGG T     GL P EP T+ +
Sbjct: 157 LRRGGGGNTTSTEDGLPPEEPTTTTE 182


>Z81097-8|CAL44976.1|  185|Caenorhabditis elegans Hypothetical
           protein K07A1.17 protein.
          Length = 185

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/39 (25%), Positives = 24/39 (61%)
 Frame = +3

Query: 288 SYIVFXI*KYLNLISLKIIVIFVHSHITLYYKVASLFPS 404
           S++V    KY+  + L++I +F H+ ++  +  A++ P+
Sbjct: 86  SFLVTFATKYIRFLHLQMIYLFAHTILSFIFLFANIVPN 124


>Z67754-2|CAA91752.2|  677|Caenorhabditis elegans Hypothetical
           protein C34E11.2 protein.
          Length = 677

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 3/78 (3%)
 Frame = -2

Query: 722 PAPTTRWPVAVEQLINKVDTEISRIATTLQPDIPITVEAREADDTYEAE---TSGDVTGS 552
           PAPT   P    +  N+           L      T  A +   T E     T   V+ +
Sbjct: 426 PAPTVNVPTLPRKDYNQSPAHTPEHVCPLPRSFSSTPAAEQFLPTLEGAPVWTPSAVSTA 485

Query: 551 SGLRPPVLTAVSPPPLRR 498
           S L PP+  +  PPPL R
Sbjct: 486 SELSPPIPMSSPPPPLPR 503


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,270,923
Number of Sequences: 27780
Number of extensions: 292737
Number of successful extensions: 818
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)