Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1505
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    24   1.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   5.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   5.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.3  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 8/28 (28%), Positives = 16/28 (57%)
 Frame = -2

Query: 671 VDTEISRIATTLQPDIPITVEAREADDT 588
           V+  + R+ T   PD+PI ++ ++   T
Sbjct: 768 VEAILKRVQTPFDPDVPIELQIQKQSHT 795


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 527 TAVSPPPLRRR 495
           T VSPPP +RR
Sbjct: 900 TVVSPPPTKRR 910


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -2

Query: 527 TAVSPPPLRRR 495
           T VSPPP +RR
Sbjct: 938 TVVSPPPTKRR 948


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 748  DARLFPVTFRPPPRD 704
            D     VT++PPPR+
Sbjct: 989  DQHTLKVTWKPPPRE 1003


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,663
Number of Sequences: 438
Number of extensions: 3535
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)