Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1504
         (530 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      26   0.28 
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        23   2.6  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   5.9  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   5.9  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 25.8 bits (54), Expect = 0.28
 Identities = 11/42 (26%), Positives = 17/42 (40%)
 Frame = -3

Query: 303 PTAAPYPTPLSPTPKTARSSISAVTESNRKREAVHPGRSTMR 178
           P     PTP++PTP T +  +        +R    P   T +
Sbjct: 151 PRGGSLPTPVTPTPTTVQQLLRRAQIRRNERRTPDPHDETAK 192


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 324 RRARSWAPTAAPYPTPLSPTPKTARSSISAVTESNR 217
           R A +W   A PY   L+P   +A+   + + E+++
Sbjct: 208 RPAANWGYYAYPYCYNLTPNQPSAQCEATTMQENDK 243


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 67  IFKLLTPSWEACSCQVAVRRSSFHIQQL 150
           IF ++  S+ + S QVA     FHI Q+
Sbjct: 70  IFGVIGGSYSSVSLQVANLLRLFHIPQI 97


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 67  IFKLLTPSWEACSCQVAVRRSSFHIQQL 150
           IF ++  S+ + S QVA     FHI Q+
Sbjct: 160 IFGVIGGSYSSVSLQVANLLRLFHIPQI 187


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,498
Number of Sequences: 438
Number of extensions: 3300
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)