Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1503
         (339 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   0.78 
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    26   1.8  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   2.4  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    24   5.5  
SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5 |Schizosacch...    24   5.5  
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po...    24   7.3  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    23   9.6  

>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 27.1 bits (57), Expect = 0.78
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +3

Query: 63  LWVYGGQYMEQIRVVLGLIR-RFLLDH-QPFVLFHR 164
           LW  G + +  + + L L    F+  H QP+VLFHR
Sbjct: 187 LWTEGSENLPSLDIQLQLAHIYFIYAHGQPYVLFHR 222


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = -2

Query: 194 HIKQEPLDDYS---MEQHEGLMIKQEPP 120
           HI  +  +DYS   + QHE  + KQ+PP
Sbjct: 498 HICTQIPEDYSPKFLSQHESFVYKQQPP 525


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -2

Query: 263 LEGTRSAHAAPGTRNTS--SSPSXIHIKQEPLDDYSMEQHEGL 141
           +EGT SA   P T +TS  SSPS   ++    +D     + GL
Sbjct: 52  VEGTHSASVHPSTSSTSHISSPSAFSVQNPNPNDAPFVGNIGL 94


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 272 FAALEGTRSAHAAPGTRNTSSSPSXIHIKQEPLDDYSMEQHEGLMIKQ 129
           F  +  T  A + P  RNTSS  + + + ++   D+S   H+  +IKQ
Sbjct: 152 FVNILRTPFAQSTPLNRNTSSRNTEMPLVRKDKPDFSNGHHD--LIKQ 197


>SPAC144.06 |apl5||AP-3 adaptor complex subunit Apl5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 24.2 bits (50), Expect = 5.5
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 140 MIKQEPPDETKYNPDLFHVLT 78
           + ++ P +  ++ PDLFH+LT
Sbjct: 199 LARRAPKNYLEFAPDLFHLLT 219


>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 365

 Score = 23.8 bits (49), Expect = 7.3
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
 Frame = -2

Query: 266 ALEGTRSAHAAPGTRNTSSSPSXIHIK------QEPLDDYS 162
           A EG++S  AAP     SS+P+  + K      Q+PL ++S
Sbjct: 310 AYEGSKSYSAAPEASMESSAPTESYDKPAASEEQQPLQNHS 350


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 23.4 bits (48), Expect = 9.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 248 SAHAAPGTRNTSSSPSXI 195
           S+H APG + ++S PS +
Sbjct: 59  SSHGAPGHQTSASQPSTV 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,077,056
Number of Sequences: 5004
Number of extensions: 17873
Number of successful extensions: 60
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 98026656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)