Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1503
(339 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 29 1.2
02_01_0198 + 1334563-1334994,1335872-1335919,1336096-1336351,133... 28 1.6
05_01_0536 - 4622767-4622865,4623550-4623673,4624571-4624685,462... 27 3.8
12_02_0556 + 20415683-20416841,20417563-20417726,20417837-204179... 27 5.0
06_03_0927 + 26015956-26018230,26018323-26018471,26018550-260186... 27 5.0
11_03_0030 + 9089087-9089207,9090406-9090533,9090897-9090954,909... 26 6.6
07_01_0121 - 924306-925838 26 6.6
05_04_0213 + 19109369-19109581,19109803-19109873,19110175-191102... 26 6.6
10_01_0175 + 1959565-1960431,1960886-1960955,1961537-1961704,196... 26 8.7
05_01_0083 + 558921-559126,560011-560317,560374-560442 26 8.7
03_06_0313 + 33073542-33074464,33074901-33075069 26 8.7
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 28.7 bits (61), Expect = 1.2
Identities = 18/65 (27%), Positives = 26/65 (40%)
Frame = -2
Query: 254 TRSAHAAPGTRNTSSSPSXIHIKQEPLDDYSMEQHEGLMIKQEPPDETKYNPDLFHVLTP 75
T + ++P T S SP H P S + PP+++ P HV +P
Sbjct: 808 TPAEESSPPTPEKSPSPPSGHEGTPPSPVKSSSPPPEAHVSSPPPEKSSSPPPEAHVSSP 867
Query: 74 IHPEK 60
PEK
Sbjct: 868 PPPEK 872
>02_01_0198 +
1334563-1334994,1335872-1335919,1336096-1336351,
1336733-1336881,1336969-1337097,1337425-1337592,
1338416-1338610
Length = 458
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 87 MEQIRVVLGLIRRFLLDHQPFVLFHR 164
+ ++ VLG++R+FL+DH LF R
Sbjct: 269 LHALKSVLGVLRKFLVDHGVLHLFER 294
>05_01_0536 -
4622767-4622865,4623550-4623673,4624571-4624685,
4624784-4625028,4625081-4625316
Length = 272
Score = 27.1 bits (57), Expect = 3.8
Identities = 16/57 (28%), Positives = 27/57 (47%)
Frame = -2
Query: 263 LEGTRSAHAAPGTRNTSSSPSXIHIKQEPLDDYSMEQHEGLMIKQEPPDETKYNPDL 93
L G+ S+ ++ + ++SSSPS K+ D + G + PP K PD+
Sbjct: 29 LPGSSSSSSSSSSSSSSSSPSEPDRKRASATDDDPDNRLGSTATESPP-SPKLQPDM 84
>12_02_0556 +
20415683-20416841,20417563-20417726,20417837-20417926,
20427889-20429145
Length = 889
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/29 (31%), Positives = 16/29 (55%)
Frame = +2
Query: 38 NQMLYMYISLGVWGSIHGTDPGCTWSHPE 124
N + Y+ I W +++ ++PGC PE
Sbjct: 429 NNIKYLRIDFSGWYNLYCSEPGCLCHQPE 457
>06_03_0927 +
26015956-26018230,26018323-26018471,26018550-26018618,
26018701-26018853,26018927-26019090,26019207-26019354,
26020348-26020470,26020560-26020647,26020781-26020950
Length = 1112
Score = 26.6 bits (56), Expect = 5.0
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 236 APGTRNTSSSPSXIHIKQEPLDDYSMEQHEGLMIKQEPPDETKYNPDL 93
+PG+ ++ S S HI Q+PL + G + Q P + N L
Sbjct: 418 SPGSAHSDISSSHQHIMQQPLPPQQQQLPSGQGMAQYPVKQNSPNNQL 465
>11_03_0030 +
9089087-9089207,9090406-9090533,9090897-9090954,
9091055-9091096,9091678-9091796,9092187-9092253,
9092616-9092707,9092966-9093025,9093026-9093163,
9093242-9093346,9093450-9093533,9093699-9093823,
9094160-9094202
Length = 393
Score = 26.2 bits (55), Expect = 6.6
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -2
Query: 293 VPLALGAFAALEGTRSAHAAPGTRNTSS 210
+PLAL A AAL T S+ A TR++SS
Sbjct: 1 MPLALLARAALSSTSSSIAMATTRSSSS 28
>07_01_0121 - 924306-925838
Length = 510
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 60 FLWVYGGQYMEQIRVVLGLIRRFLLDHQPFVLF 158
+LW G +Q++ VLG ++ L D + FV+F
Sbjct: 113 YLWDGGQTLQDQLQQVLGRLQVTLEDMREFVIF 145
>05_04_0213 +
19109369-19109581,19109803-19109873,19110175-19110229,
19110441-19110626
Length = 174
Score = 26.2 bits (55), Expect = 6.6
Identities = 7/21 (33%), Positives = 14/21 (66%)
Frame = +3
Query: 36 GIKCCTCTFLWVYGGQYMEQI 98
G+ CCT + W++G ++ + I
Sbjct: 92 GLTCCTTSSKWIFGRKHTQNI 112
>10_01_0175 +
1959565-1960431,1960886-1960955,1961537-1961704,
1962570-1962676
Length = 403
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = -2
Query: 212 SSPSXIHIKQEPLDDYSMEQHEGLMIKQEPPDETKYNPDLFHVLTPIHP 66
SS + H K EP ++ + + + I + PP +T PD +H T I P
Sbjct: 275 SSKTKAHPKHEPFEESDVPLVKLVTINKAPPRDT---PD-YHAPTRIQP 319
>05_01_0083 + 558921-559126,560011-560317,560374-560442
Length = 193
Score = 25.8 bits (54), Expect = 8.7
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -2
Query: 287 LALGAFAALEGTRSAHAAPGTRNTSSSPSXIH 192
LAL A A++EG+ HAA G S H
Sbjct: 162 LALDASASVEGSSPVHAASGANQRLSRAMSAH 193
>03_06_0313 + 33073542-33074464,33074901-33075069
Length = 363
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +2
Query: 20 ILNFIGNQMLYMYISLGVWGSIHGTDPGCTWSHPEVLA*SSALRAVPSSSR 172
++ + N++ + LG S DPGC HP A SS PS+ R
Sbjct: 40 VVTILSNRVGHARARLGKRRSSPPVDPGCLMDHPLAAAASS---PAPSNGR 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,786,518
Number of Sequences: 37544
Number of extensions: 143982
Number of successful extensions: 519
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 470052804
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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