Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1503
         (339 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75527-1|CAA99774.1|  441|Caenorhabditis elegans Hypothetical pr...    27   4.5  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    26   6.0  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    26   6.0  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    26   6.0  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    26   6.0  

>Z75527-1|CAA99774.1|  441|Caenorhabditis elegans Hypothetical
           protein C15C8.1 protein.
          Length = 441

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = -2

Query: 272 FAALEGTRSAHAAPGTRNTSSSPSXIHIKQEPLDDYSMEQHEGLMIKQEPPDETKYNPDL 93
           FA  +  R  H   G    + +   I  + +PL    M+  E    K+ PP  T  NP +
Sbjct: 313 FAIDQWIRRQHHPTGNPTATQNKVFIATQNQPL---LMDTGE----KKSPPPPTPPNPPV 365

Query: 92  FHVLTPI--HPE 63
            H + P+  HP+
Sbjct: 366 NHAIAPVAQHPQ 377


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 213  ACVPCPGSGVSASCPFESG 269
            ACVPC  +G SA+C  ++G
Sbjct: 1826 ACVPCECNGHSATCDPDTG 1844


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 213  ACVPCPGSGVSASCPFESG 269
            ACVPC  +G SA+C  ++G
Sbjct: 1826 ACVPCECNGHSATCDPDTG 1844


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 213  ACVPCPGSGVSASCPFESG 269
            ACVPC  +G SA+C  ++G
Sbjct: 1826 ACVPCECNGHSATCDPDTG 1844


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 213  ACVPCPGSGVSASCPFESG 269
            ACVPC  +G SA+C  ++G
Sbjct: 1826 ACVPCECNGHSATCDPDTG 1844


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,129,491
Number of Sequences: 27780
Number of extensions: 107770
Number of successful extensions: 360
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 429601520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)