Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1503
         (339 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   1.8  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   7.1  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    20   7.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    20   7.1  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    20   9.4  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    20   9.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -2

Query: 191 IKQEPLDDYSMEQHEGLMIKQEPPDETK 108
           IK EP+D Y M Q     +    P  +K
Sbjct: 256 IKSEPIDAYEMHQISKKKLSPATPKGSK 283


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/16 (43%), Positives = 8/16 (50%)
 Frame = +2

Query: 74  WGSIHGTDPGCTWSHP 121
           W  +  T P  TW HP
Sbjct: 530 WNPLTDTVPIHTWIHP 545


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +3

Query: 63  LWVYGGQYM 89
           +W+YGG +M
Sbjct: 162 VWIYGGGFM 170


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +3

Query: 63  LWVYGGQYM 89
           +W+YGG +M
Sbjct: 162 VWIYGGGFM 170


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +3

Query: 51  TCTFLWVY 74
           TC F+W Y
Sbjct: 222 TCIFIWAY 229


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 5/8 (62%), Positives = 6/8 (75%)
 Frame = +3

Query: 51  TCTFLWVY 74
           TC F+W Y
Sbjct: 222 TCIFIWAY 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,442
Number of Sequences: 438
Number of extensions: 1327
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7715466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)