Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1500
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 192 3e-50
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 114 1e-26
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 114 1e-26
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 110 2e-25
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 102 5e-23
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 83 5e-17
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 73 6e-14
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 56 5e-09
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60... 31 0.18
SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces pomb... 29 0.71
SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces pomb... 29 0.94
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 28 1.2
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 28 1.6
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 2.9
SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyc... 27 2.9
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 26 6.6
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 192 bits (469), Expect = 3e-50
Identities = 95/160 (59%), Positives = 115/160 (71%)
Frame = -3
Query: 709 GXPGAKTCTLILRGGAEQFLEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRS 530
G P AKTCTLILRGGA+QF+ E ERSLHDAIMIV+ +KN+ VVAGGGA +M++S +LR
Sbjct: 368 GCPKAKTCTLILRGGADQFIAEVERSLHDAIMIVKHALKNNLVVAGGGACEMELSKYLRD 427
Query: 529 HSLQLAGKEQLXXXXXXXXXXAIPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISG 350
+SL ++GK+Q IPRQL DNAG D T +LNKLR +HA GE GVD+ S
Sbjct: 428 YSLTISGKQQNFIAAFARSLEVIPRQLCDNAGFDSTNILNKLRMQHAKGEMWAGVDMDSE 487
Query: 349 EVVDNFAKCVWEPALVKLNAVSAACEATAQILSVDETIKN 230
V +NF K VWEP+ VK NA+ +A EA ILSVDETIKN
Sbjct: 488 GVANNFEKFVWEPSTVKSNAILSATEAATLILSVDETIKN 527
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 114 bits (275), Expect = 1e-26
Identities = 58/168 (34%), Positives = 85/168 (50%)
Frame = -3
Query: 715 LYGXPGAKTCTLILRGGAEQFLEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHL 536
L G K CT++LRG ++ + E ER+L DA+ + R + + GGGA +M +S L
Sbjct: 361 LTGCKNPKACTILLRGPSKDIINEVERNLQDAMAVARNVFFHPKLSPGGGATEMAVSVRL 420
Query: 535 RSHSLQLAGKEQLXXXXXXXXXXAIPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVI 356
+ + G Q IPR L N G + L +LR KHA G+H+ G+D
Sbjct: 421 AEKARSIEGVAQWPYRAVADAIEIIPRTLVQNCGANPIKALTELRAKHAEGQHSFGIDGE 480
Query: 355 SGEVVDNFAKCVWEPALVKLNAVSAACEATAQILSVDETIKNVKGGEE 212
+G VVD VWEP VKL ++ A E+ +L VD+ + V+ E
Sbjct: 481 TGRVVDMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIVSGVRKHSE 528
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 114 bits (274), Expect = 1e-26
Identities = 56/151 (37%), Positives = 90/151 (59%)
Frame = -3
Query: 694 KTCTLILRGGAEQFLEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSLQL 515
KT +++ RG LEE ERSLHDA+ ++R +K A++AGGG+ +++ + L H+ QL
Sbjct: 372 KTVSILCRGANLLTLEEAERSLHDALCVIRCLVKQRALIAGGGSPEIEAAQRLLEHARQL 431
Query: 514 AGKEQLXXXXXXXXXXAIPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVDN 335
G+E + IP LA+NAGL+ ++ +LR +HA GE T G++V G V +
Sbjct: 432 EGREAICIRAFSEALEIIPVTLAENAGLNAIQVVTELRSRHANGEKTAGINVRKGIVTNI 491
Query: 334 FAKCVWEPALVKLNAVSAACEATAQILSVDE 242
+ V +P LV ++A+ A E T I+ +D+
Sbjct: 492 LEENVLQPLLVNISAIQLAAETTKMIMKIDD 522
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 110 bits (264), Expect = 2e-25
Identities = 63/174 (36%), Positives = 97/174 (55%), Gaps = 12/174 (6%)
Frame = -3
Query: 718 ILYGXPGAKTCTLILRGGAEQFLEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAH 539
++ G + +++LRG E L+E ERS+HD++ +V+RT+++ VV GGGAV+ +S +
Sbjct: 368 LVKGTKAYSSASIVLRGPNEYSLDEMERSMHDSLSVVKRTLESGKVVPGGGAVETALSIY 427
Query: 538 LRSHSLQLAGKEQLXXXXXXXXXXAIPRQLADNAGLDGTGLLNKLRQKHAA--------- 386
L + + L +EQL IPR LA NA D T L KLR HAA
Sbjct: 428 LENFATSLGSREQLAIAEFAQALLIIPRTLAVNAAKDSTELTAKLRAYHAASQNAEVTDV 487
Query: 385 ---GEHTHGVDVISGEVVDNFAKCVWEPALVKLNAVSAACEATAQILSVDETIK 233
G +G+D+++G + DN V EP++ KL ++ +A EA IL +D +IK
Sbjct: 488 KKRGYKNYGLDLLNGVIRDNVKAGVLEPSMSKLKSLKSAVEACIAILRIDTSIK 541
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 102 bits (245), Expect = 5e-23
Identities = 51/159 (32%), Positives = 83/159 (52%)
Frame = -3
Query: 709 GXPGAKTCTLILRGGAEQFLEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRS 530
G + CT++LRG Q L+E+ER++HDA+ ++ +T+ V GGG +M ++ +
Sbjct: 360 GVEAGEACTIVLRGATHQLLDESERAIHDALAVLSQTVAESRVTLGGGCAEMLMAKAVEE 419
Query: 529 HSLQLAGKEQLXXXXXXXXXXAIPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISG 350
+ GK+ + +P LADNAG D + L+ +L+ H G T G+D+ G
Sbjct: 420 AATHEPGKKAVAVSAFAKALSQLPTILADNAGFDSSELVAQLKAAHYDGNDTMGLDMDEG 479
Query: 349 EVVDNFAKCVWEPALVKLNAVSAACEATAQILSVDETIK 233
E+ D AK + E +K VS+ E +L VD +K
Sbjct: 480 EIADMRAKGILEALKLKQAVVSSGSEGAQLLLRVDTILK 518
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 82.6 bits (195), Expect = 5e-17
Identities = 47/162 (29%), Positives = 85/162 (52%), Gaps = 3/162 (1%)
Frame = -3
Query: 694 KTCTLILRGGAEQFLEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSLQL 515
+T T++LRG + +L++ ER++ D + IV+ +K++ ++ G GA DMQ+ L S +
Sbjct: 371 RTATIVLRGATKTYLDDLERAIDDGVNIVKALVKDNRLIFGAGASDMQLCIRLISVGEKT 430
Query: 514 AGKEQLXXXXXXXXXXAIPRQLADNAGLDGTGLLNKL-RQKHAAGEHTHGVDV--ISGEV 344
G Q +PR +++NAGLD T +++KL H + GVDV +
Sbjct: 431 PGIYQHAIKQYGEAFEVVPRTISENAGLDPTDVISKLYAAHHKENGESIGVDVECENDGT 490
Query: 343 VDNFAKCVWEPALVKLNAVSAACEATAQILSVDETIKNVKGG 218
+D +++ L K +A+ A E +L+VD+ + + G
Sbjct: 491 LDAKEAGIFDVLLAKKSAIRLATETVLTVLNVDQVVMSKPAG 532
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 72.5 bits (170), Expect = 6e-14
Identities = 40/155 (25%), Positives = 77/155 (49%), Gaps = 1/155 (0%)
Frame = -3
Query: 697 AKTCTLILRGGAEQFLEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSLQ 518
++ T+ +RG + ++E +R+LHDA+ +VR I+++ VV GGGA ++ S + + +
Sbjct: 382 SRAVTVFVRGSNKMIVDEAKRALHDALCVVRNLIRDNRVVYGGGAAEISCSLAVTKEAEK 441
Query: 517 LAGKEQLXXXXXXXXXXAIPRQLADNAGLDGTGLLNKLRQKHAAGEHTH-GVDVISGEVV 341
+ G +Q IP LA+N+GL L ++ +H + G+D +
Sbjct: 442 IPGIDQYSMGAFADALDTIPLALAENSGLSSIEALTAVKARHVKENKAYLGIDCLQTGSN 501
Query: 340 DNFAKCVWEPALVKLNAVSAACEATAQILSVDETI 236
D + V +P + K + A + +L V++ I
Sbjct: 502 DMRKQFVIDPLIGKKQQLLLATQLCRMVLKVNDII 536
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 56.0 bits (129), Expect = 5e-09
Identities = 31/156 (19%), Positives = 81/156 (51%), Gaps = 2/156 (1%)
Frame = -3
Query: 694 KTCTLILRGGAEQFLEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSH--SL 521
K+ T+++ G +++ + + D + V+ ++++ ++ G GA ++ +AHLR+ +
Sbjct: 369 KSATILIHGPNTYTIQQIQDATRDGLRAVKNAVEDNCLIVGAGAFEVACAAHLRNKFAAK 428
Query: 520 QLAGKEQLXXXXXXXXXXAIPRQLADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVV 341
++ GK ++ IP+ LA N+ D + L+++ + G + G+D+ +G
Sbjct: 429 EVKGKAKMGVYAYADALLIIPKTLAANSSYDTQDAIVALQEEASEG-YKVGLDLKTGMPF 487
Query: 340 DNFAKCVWEPALVKLNAVSAACEATAQILSVDETIK 233
D + +++ V + + +A + ++SVD+ ++
Sbjct: 488 DPEVEGIYDNYRVIRHMLHSATVIASNLISVDQILR 523
>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
Length = 582
Score = 31.1 bits (67), Expect = 0.18
Identities = 27/112 (24%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Frame = -3
Query: 670 GGAEQFLEETERSLHDAIMIVRRTIKNDAVVAGGGAVDMQISAHLRSHSLQLAGKEQLXX 491
G +E + E + + DA+ V+ + ++ V+ G G + A LR + +Q
Sbjct: 415 GSSEVEVNEKKDRIVDALNAVKAAV-SEGVLPGAGT--SFVKASLRLGDIPTNNFDQKLG 471
Query: 490 XXXXXXXXAIPRQ-LADNAGLDGTGLLNKLRQKHAAGEHTHGVDVISGEVVD 338
P Q + +NAGL+G ++ KL++ + E G D+ VD
Sbjct: 472 VEIVRKAITRPAQTILENAGLEGNLIVGKLKELYGK-EFNIGYDIAKDRFVD 522
>SPBC119.10 |asn1||asparagine synthetase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 557
Score = 29.1 bits (62), Expect = 0.71
Identities = 18/46 (39%), Positives = 24/46 (52%)
Frame = +2
Query: 287 HGVKLDEGRLPHTLRKVIHHLSTDNVHTVRVLPSGVLLPQFIEESG 424
H +DEG LR VI+HL T +V T+R LL + I+ G
Sbjct: 305 HTFTIDEGL--DALRDVIYHLETYDVTTIRASTPMYLLSRKIKAQG 348
>SPBP4H10.10 |||rhomboid family protease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 392
Score = 28.7 bits (61), Expect = 0.94
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 570 PPATTASFLIVLRTIMMASCRERSVSSKNCSAPPRRINVHV 692
PP TAS L + R ++ S RS+SS + S+P + H+
Sbjct: 27 PPFQTASSLNIFRPYVIFSRSHRSLSSVDVSSPSLPLREHL 67
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -1
Query: 351 ERW--WITLRSVCGSRPSSSLTP*VPPA-RPPL 262
E W W T+RS CG P + +PPA PP+
Sbjct: 174 ETWKMWDTIRSACGYHPRLKVALELPPACSPPI 206
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 27.9 bits (59), Expect = 1.6
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +2
Query: 350 STDNVHTVRVLPSGVLLPQFIEESGPVQACIVCQLTRDGLKRAGHCR 490
S + VHT LP+ L +F + C +C+ +R HCR
Sbjct: 37 SENVVHTTLKLPTSTLSREFWMKDERTNNCSLCETEFTLFRRKHHCR 83
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.1 bits (57), Expect = 2.9
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = -1
Query: 387 LGSTRTVWTLSVERWWITLRSVC 319
L T TVW + WW+++ ++C
Sbjct: 1523 LFGTMTVWVAHLIYWWVSIMALC 1545
>SPAC27D7.07c |smd1||Sm snRNP core protein Smd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 27.1 bits (57), Expect = 2.9
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -3
Query: 598 IKNDAVVAGG-GAVDMQISAHLRSHSLQLAGKE 503
+KN +V G +VDMQ++ HL++ + + G+E
Sbjct: 19 LKNGTIVHGTITSVDMQMNTHLKAVKMTVKGRE 51
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = -1
Query: 315 SRPSSSLTP*VPPARPP 265
S PSSS TP PP PP
Sbjct: 3 SAPSSSTTPASPPTSPP 19
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,877,471
Number of Sequences: 5004
Number of extensions: 55452
Number of successful extensions: 179
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -