Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1499
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    29   0.94 
SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual    27   3.8  
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr...    26   5.0  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.6  

>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = -3

Query: 658 IIETSMKKIREEAKWSIENIPVIEKWLDDYVARYGVKDELL 536
           ++ +S + +RE+A W++ NI        D+V + GV + LL
Sbjct: 171 LLSSSEQDVREQAVWALGNIAGDSPMCRDHVLQCGVLEPLL 211


>SPBC359.06 |mug14||adducin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 257

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 404 EHTFFLNPLKTHFFLNKPNN 463
           E+TF++NPL+  F L KP++
Sbjct: 52  ENTFWINPLEVPFSLMKPSD 71


>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 539

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 658 IIETSMKKIREEAKWSIENIPVIEKWLDDYVARYGVKDELL 536
           ++ +  K +RE+  W++ NI        DYV   GV   LL
Sbjct: 170 LLSSPEKDVREQVVWALGNIAGDSSACRDYVLGNGVLQPLL 210


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = +3

Query: 15  FSYTNLLTINT*FTSAFTNKFLFKINSRFTIIVCKIYKYTYPINNDII 158
           +S+ N    N  F  +  N  L KI      IVC  Y Y   + N+ I
Sbjct: 8   YSHKNFNVTNNNFQVSCFNPILLKIILFLNTIVCIFYVYKIALCNEYI 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,897,508
Number of Sequences: 5004
Number of extensions: 58544
Number of successful extensions: 127
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)