Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1498
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   3.1  
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha...    26   5.4  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   9.5  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 589 INDFSNLSQRLTLLNKNEWHFWFVHC 666
           + D SN+ QRL L + N+ + W V C
Sbjct: 222 VGDTSNVPQRLLLPSVNDPNIWAVRC 247


>SPCC1753.02c |git3||G-protein coupled receptor
           Git3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -2

Query: 676 NIMCNVQTKNAIHFCSVMLTFGSNWRNHLYCLNLSIYIIAL 554
           N   N+QT+  + +  V   FG NW    +   LSI IIAL
Sbjct: 167 NTFVNLQTRCYLPYTPVRFMFGLNWS---FDYALSIAIIAL 204


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +1

Query: 574 RDLNNINDFSNLSQR---LTLLNKNEWHFWFVHCT 669
           +D ++I + SN+S+    +   N+N+ H W   CT
Sbjct: 625 QDFDSITNASNVSKSEVWVLYANRNDTHLWSYDCT 659


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,937,910
Number of Sequences: 5004
Number of extensions: 58432
Number of successful extensions: 111
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)