Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1498
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0451 - 3404749-3405171,3405444-3405599,3405711-3406583,340...    31   1.4  
02_02_0015 + 6109552-6109650,6110006-6110078,6111937-6111998,611...    28   7.5  

>07_01_0451 -
           3404749-3405171,3405444-3405599,3405711-3406583,
           3406847-3406942
          Length = 515

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +1

Query: 586 NINDFSNLSQRLTLLNKNEWHFWFVHCT*YL--KNCMGTLKTFLLCIDHSIXGVNMSGQC 759
           +I DF+ + +   L+ K E+H W ++C  +L  +   G L+T   C  + +  VN++G  
Sbjct: 355 DILDFACILEAAPLMEKLEFHMW-MNCRDHLRYRKAHGKLRTLPPCPHYHLKEVNIAGFY 413

Query: 760 SKK 768
            +K
Sbjct: 414 GQK 416


>02_02_0015 +
           6109552-6109650,6110006-6110078,6111937-6111998,
           6112315-6112376,6112463-6112556,6112673-6113227,
           6113379-6113870,6113967-6114137,6115713-6115817,
           6115903-6116052,6116372-6116498,6116585-6116648,
           6117147-6117203,6117423-6117555,6117660-6117746
          Length = 776

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 715 IVKMFLKYPCSSLNIMCNVQTKNAIHFCSVMLT 617
           I++  LK P +   I CN  T N   FC + +T
Sbjct: 14  IIRGLLKLPANKRCINCNNLTTNVATFCQIYIT 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,119,088
Number of Sequences: 37544
Number of extensions: 273211
Number of successful extensions: 410
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)