Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1496
(750 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein L25|S... 144 1e-35
SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein L25|Schizosacch... 136 3e-33
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 31 0.23
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 2.2
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ... 27 3.8
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 5.0
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 8.7
>SPBC4F6.04 |rpl2502|rpl25b, rpl23a-2|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 144 bits (349), Expect = 1e-35
Identities = 75/139 (53%), Positives = 89/139 (64%)
Frame = -1
Query: 471 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 292
V KA AQ+ V KG H K RK+R S FRRPKT E R PKY RKS+P +R+D Y II
Sbjct: 3 VGKAKGAQKTVQKGIHNKVARKVRTSTTFRRPKTLELARKPKYARKSVPHASRLDEYKII 62
Query: 291 KFPLTSEAAMKKIEDNNXLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXX 112
P+ SE+AMKKIED+N LVF VH ANK IK AVKKLY ++ K+NTLIRP+G KK
Sbjct: 63 VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKNAVKKLYSVDAVKINTLIRPNGTKKAF 122
Query: 111 XXXXXXXXXXXXANKIGII 55
AN+IG +
Sbjct: 123 VKLSADADALDVANRIGFL 141
>SPBC106.18 |rpl2501|rpl25a|60S ribosomal protein
L25|Schizosaccharomyces pombe|chr 2|||Manual
Length = 141
Score = 136 bits (329), Expect = 3e-33
Identities = 71/139 (51%), Positives = 86/139 (61%)
Frame = -1
Query: 471 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 292
V KA AQ+ V KG H K +K+R S FRRPKT + R PKY RKS+ R+D Y II
Sbjct: 3 VAKAKGAQKTVQKGIHNKVAKKVRTSTTFRRPKTLQLSRKPKYARKSVAHAPRLDEYKII 62
Query: 291 KFPLTSEAAMKKIEDNNXLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXX 112
P+ SE+AMKKIED+N LVF VH ANK IK AV+KLY + K+NTLIRP+G KK
Sbjct: 63 VNPINSESAMKKIEDDNTLVFHVHLKANKFTIKEAVRKLYSVEPVKINTLIRPNGTKKAF 122
Query: 111 XXXXXXXXXXXXANKIGII 55
AN+IG +
Sbjct: 123 VKLSADADALDVANRIGFL 141
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 30.7 bits (66), Expect = 0.23
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +1
Query: 40 IWNSLYDANFVGNVQCVIISSESYVRFLLTIRPDECVDF 156
+W +++ A FV + + +S +RFL ++P +C DF
Sbjct: 599 LWITVFIAKFVESYYFLTLSVRDPIRFLQRMKPYDCYDF 637
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/83 (24%), Positives = 38/83 (45%)
Frame = -2
Query: 290 NSLSRLKQQ*RRLKITTPWSLLFTQVQTSTISRLQSRNSMI*MLLKSTHSSGLMVRRKRT 111
N L +L+ R +K+T+ T + S+++S + + L T + L+ +
Sbjct: 396 NLLFKLQTLNRNIKVTSQSKDSLTSIVGDLESKIKSLHESVSSL--DTERADLLAKINEK 453
Query: 110 YDSLEMMTHWTLPTKLASYKLFH 42
+SLE+ H +L +LFH
Sbjct: 454 IESLELEKHDQQKKRLTYSELFH 476
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Frame = +1
Query: 307 IHAISLRQRLPWVFRVPR--RFKRLGSAEMHRVANFPYSLPMFTFYNLPLSLKCFSNRFH 480
+ A + R P R P+ RF+ L S++ + + PY+ P F S + + H
Sbjct: 196 LRASPVSSRTPSPTRFPKHARFQTLNSSDSASIYSSPYTSPTLEFSKKDASARSDILKMH 255
Query: 481 YFFLSLNPSL 510
S PSL
Sbjct: 256 RRTKSATPSL 265
>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 3655
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 82 QCVIISSESYVRFLLTIRPDECVDFSNIY 168
+C+ I E + FL I+P E V F ++
Sbjct: 518 RCIEIGGEQFSGFLTNIKPFEAVTFQKLF 546
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 571 SQNCQTQASSFQIEDCTEAQKDWD*GTKKS 482
S+NCQ + +++C EA D D G K+
Sbjct: 479 SENCQKLSKQIPLDECNEALFDDDNGDYKA 508
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 46 NSLYDANFVGNVQCVIISSESYVRFLLTIRPD 141
++ +NF NV C I +S F IRPD
Sbjct: 866 HTFISSNFFENVPCYISLEQSLQNFQNDIRPD 897
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,715
Number of Sequences: 5004
Number of extensions: 44238
Number of successful extensions: 135
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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