Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1496
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal prote... 140 1e-33
Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical pr... 137 7e-33
Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical pr... 31 0.87
Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical pr... 31 0.87
X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein. 31 0.87
X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein. 31 0.87
Z93393-7|CAB07694.1| 383|Caenorhabditis elegans Hypothetical pr... 29 2.7
AC024797-3|AAF60706.1| 112|Caenorhabditis elegans Hypothetical ... 29 3.5
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr... 29 4.7
Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr... 28 6.2
U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical pr... 28 6.2
U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical pr... 28 6.2
U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical pr... 28 6.2
U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical pr... 28 8.1
>U40948-2|AAA81728.1| 147|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 25.1 protein.
Length = 147
Score = 140 bits (338), Expect = 1e-33
Identities = 71/137 (51%), Positives = 92/137 (67%)
Frame = -1
Query: 465 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 286
KAL A++KVVKG+ R++R SVHFRRP T + R ++PRKS PK ++MD + II+
Sbjct: 11 KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQH 70
Query: 285 PLTSEAAMKKIEDNNXLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXXXX 106
PLT+E+AMKKIE++N LVFIV ANK+ IK AV KLY++ KVNTLI P +KK
Sbjct: 71 PLTTESAMKKIEEHNTLVFIVSNDANKYQIKDAVHKLYNVQALKVNTLITPLQQKKAYVR 130
Query: 105 XXXXXXXXXXANKIGII 55
ANKIG+I
Sbjct: 131 LTADYDALDVANKIGVI 147
>Z75541-4|CAA99858.1| 146|Caenorhabditis elegans Hypothetical
protein F52B5.6 protein.
Length = 146
Score = 137 bits (332), Expect = 7e-33
Identities = 70/139 (50%), Positives = 90/139 (64%)
Frame = -1
Query: 471 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 292
V KA++A++ VVKG + +R SVHFRRPKT R P+Y RKS P R+++D++ +I
Sbjct: 8 VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVI 67
Query: 291 KFPLTSEAAMKKIEDNNXLVFIVHTSANKHHIKAAVKKLYDINVAKVNTLIRPDGKKKXX 112
K P T+E++MKKIED+N LVFIV ANKHHIK AV LY++ KVNTLI P +KK
Sbjct: 68 KAPHTTESSMKKIEDHNTLVFIVDEKANKHHIKRAVHALYNVKAVKVNTLITPLQQKKAY 127
Query: 111 XXXXXXXXXXXXANKIGII 55
ANKIG I
Sbjct: 128 VRLASDYDALDVANKIGFI 146
>Z50873-2|CAA90759.2| 620|Caenorhabditis elegans Hypothetical
protein F17E5.1b protein.
Length = 620
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -1
Query: 441 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 265
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490
Query: 264 MKKIEDNNXLVFIVH 220
M I++N L + H
Sbjct: 491 MADIQNNEYLEYGTH 505
>Z50873-1|CAA90760.2| 961|Caenorhabditis elegans Hypothetical
protein F17E5.1a protein.
Length = 961
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -1
Query: 441 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 265
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831
Query: 264 MKKIEDNNXLVFIVH 220
M I++N L + H
Sbjct: 832 MADIQNNEYLEYGTH 846
>X92565-1|CAA63315.1| 620|Caenorhabditis elegans LIN-2B protein.
Length = 620
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -1
Query: 441 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 265
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490
Query: 264 MKKIEDNNXLVFIVH 220
M I++N L + H
Sbjct: 491 MADIQNNEYLEYGTH 505
>X92564-1|CAA63314.1| 961|Caenorhabditis elegans LIN-2A protein.
Length = 961
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Frame = -1
Query: 441 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 265
V+ G HG R I+N++ R P F P H P P+++ +D + + +T+E
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831
Query: 264 MKKIEDNNXLVFIVH 220
M I++N L + H
Sbjct: 832 MADIQNNEYLEYGTH 846
>Z93393-7|CAB07694.1| 383|Caenorhabditis elegans Hypothetical
protein Y48E1B.8 protein.
Length = 383
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Frame = +2
Query: 128 PSGLMSVLTLATFIS*SFLTAALIWCLFALV*TIKTKXLLSSIFFIAASDVRGNLMML*A 307
P+GL S+L L F S + W L L+ K++ L ++ ++ A +L L
Sbjct: 4 PAGLQSLLALIFFNRLSLVIFYSFWFLIGLLVLRKSQNALEAVRYVKAHSASVSLDSLEG 63
Query: 308 SMRF--LLGRDF 337
S F LL DF
Sbjct: 64 STEFRQLLEEDF 75
>AC024797-3|AAF60706.1| 112|Caenorhabditis elegans Hypothetical
protein Y48G8AR.3 protein.
Length = 112
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 393 VHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAM 262
+ FRR + RH R+++P ++ I KFP SE A+
Sbjct: 1 MEFRRKCSRSAMRHKSQKRRAMPNQDVEKVNEIFKFPRISEQAL 44
>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
C41A3.1 protein.
Length = 7829
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = +1
Query: 412 YSLPMFTFYNLPLSLKCFSNRFHYFF 489
+S + FYNL L KCFS FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317
>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical
protein F16B12.6 protein.
Length = 1392
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/71 (28%), Positives = 30/71 (42%)
Frame = -1
Query: 387 FRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAMKKIEDNNXLVFIVHTSAN 208
F P E RHP R+ P+R + +K LT A+ + V +AN
Sbjct: 190 FAHPPDLE--RHPLSKRRGRPRRPQEQLETNVKLKLTRPASKAQRAPPTEPVAARTATAN 247
Query: 207 KHHIKAAVKKL 175
+ HIK ++L
Sbjct: 248 QRHIKLFEEEL 258
>U41036-4|AAT92061.1| 1018|Caenorhabditis elegans Hypothetical
protein T14E8.1c protein.
Length = 1018
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 55 YDANFVGNVQCVI-ISSESYVRFLLTIRPDECVDFSNIYI 171
YD + Q + I+ ++YV+ ++RPD VDF N+ +
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRV 735
>U41036-3|AAL06055.1| 1030|Caenorhabditis elegans Hypothetical
protein T14E8.1b protein.
Length = 1030
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 55 YDANFVGNVQCVI-ISSESYVRFLLTIRPDECVDFSNIYI 171
YD + Q + I+ ++YV+ ++RPD VDF N+ +
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRV 735
>U41036-2|AAA82385.2| 1086|Caenorhabditis elegans Hypothetical
protein T14E8.1a protein.
Length = 1086
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +1
Query: 55 YDANFVGNVQCVI-ISSESYVRFLLTIRPDECVDFSNIYI 171
YD + Q + I+ ++YV+ ++RPD VDF N+ +
Sbjct: 696 YDMGHMAGRQAQLAINGDNYVKVFRSMRPDLKVDFKNLRV 735
>U41009-8|AAA82282.2| 500|Caenorhabditis elegans Hypothetical
protein C06E7.4 protein.
Length = 500
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -1
Query: 474 PVTKALKAQRKVVKGEHGKRVRKI-RNSVHFRRPKTFEPPRHPKYPR 337
P K LK K+ K +H K ++K+ + + P PP HP Y R
Sbjct: 111 PDAKTLKKLEKMEK-KHQKLMKKLGARGIPIQMPVPPPPPMHPMYSR 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,559,402
Number of Sequences: 27780
Number of extensions: 257982
Number of successful extensions: 851
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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