Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1495
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    28   1.8  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    27   3.1  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   9.5  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   9.5  
SPAC664.07c |rad9||checkpoint clamp complex protein Rad9|Schizos...    25   9.5  

>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 451  KFDFIKHSLGTFFFKVSCFSLPSYYSIGF 365
            K +F+  ++GT  +K+SCFS  SY  + +
Sbjct: 2129 KMEFVPPAMGTLKYKLSCFS-DSYMGVDY 2156


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 26  MASKNVASTKQPFTSRYVLSRQTDRLTAEQATL 124
           + SK ++S + PF   Y+LS +++ LT +   L
Sbjct: 18  LTSKTLSSIENPFDDPYILSEESEILTIKTDVL 50


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 456 NILKFYLHSTITSTLSSAHTCPLLDID 536
           N+L FY +S  ++T      CPL  ID
Sbjct: 627 NLLSFYEYSNPSATFIDFSFCPLTTID 653


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = +2

Query: 47  STKQPFTSRYVLSRQTDRLTAEQATLLATVSTPEHSRCYIVEQ*GTPRTATSM*T 211
           ST  P+TS  V S          +T +   STP  S  Y +    TP T+T + T
Sbjct: 476 STSIPYTSTPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISS-STPVTSTPVTT 529


>SPAC664.07c |rad9||checkpoint clamp complex protein
           Rad9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 199 GSGSRSASLLDYVAARVFRSAHGGQQCRLL 110
           G GS SAS  D +   V  S   G +CR++
Sbjct: 110 GYGSESASRKDVIVENVQISISTGSECRII 139


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,274,154
Number of Sequences: 5004
Number of extensions: 68612
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)