Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1495
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0972 - 8176013-8176960                                           30   2.5  
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862...    29   3.3  
06_03_0867 + 25534760-25539620,25540662-25540857,25540957-255411...    28   7.5  
02_01_0283 + 1903869-1904786                                           28   7.5  
01_06_0296 + 28282779-28283254,28283462-28283558,28286377-282864...    28   7.5  
03_06_0560 + 34726338-34727243                                         28   9.9  

>07_01_0972 - 8176013-8176960
          Length = 315

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 624 VWGISWSLEPNSLERPPGHASLSLWPLLGD 535
           VW +SWSL  N L    G  +++LW    D
Sbjct: 261 VWRVSWSLTGNILSVAAGENNITLWKQASD 290


>10_08_0608 + 19184722-19185224,19185331-19185410,19186048-19186235,
            19187021-19187927,19188015-19188142,19189270-19189356,
            19189422-19189472,19189582-19189668,19189746-19189873,
            19190469-19190608,19190721-19190882,19190964-19192733,
            19192807-19192922,19193077-19193227,19193243-19193371,
            19193598-19194139
          Length = 1722

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 656  HRPQGRELKWPCGGSVGPWNQTVSS 582
            +RP G   +WP  G++G WN +  S
Sbjct: 997  YRPAGSHDEWPPRGNIGEWNNSQDS 1021


>06_03_0867 + 25534760-25539620,25540662-25540857,25540957-25541104,
            25541673-25541751,25542151-25542238,25542330-25542600,
            25542676-25542718,25542801-25542904,25543374-25543790
          Length = 2068

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +2

Query: 530  HRSPKSGHNDRLACPGGRSRLFGSRDQLIPHTATL 634
            HR   S  ND L    G S + G+R+Q +P   TL
Sbjct: 1007 HRDHISSENDSLIHSRGTSSVSGNREQSVPTALTL 1041


>02_01_0283 + 1903869-1904786
          Length = 305

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 624 VWGISWSLEPNSLERPPGHASLSLW 550
           VW +SWSL  N L    G+ +++LW
Sbjct: 265 VWRLSWSLTGNILAVSDGNDNVTLW 289


>01_06_0296 +
           28282779-28283254,28283462-28283558,28286377-28286462,
           28286953-28287034,28287506-28287633,28289727-28289784,
           28290049-28290150,28290822-28290856,28291037-28291094
          Length = 373

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 359 SEEAYRVVGGKR-KTTHFEKKCPQRVFNEIKFPEYFKVLST 478
           SE   R+ GG+R K   ++KK   ++ NE+K  E+F  L T
Sbjct: 148 SELKQRISGGRRGKGNIWKKKLGGKMINEMKIFEHFTYLCT 188


>03_06_0560 + 34726338-34727243
          Length = 301

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 621 WGISWSLEPNSLERPPGHASLSLWPLLGD 535
           W +SWSL  N L    G   ++LW    D
Sbjct: 262 WRVSWSLTGNILSVAAGSGDITLWKEASD 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,676,692
Number of Sequences: 37544
Number of extensions: 471920
Number of successful extensions: 1021
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)