Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1495
         (800 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical ...    32   0.55 
Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical p...    31   0.73 
AC006617-9|AAF39767.1|  409|Caenorhabditis elegans Hypothetical ...    28   8.9  

>AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical
           protein T11F1.8 protein.
          Length = 888

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 144 GVLTVASNVACSAVSLSVCLLKTYRLVKGCLVEATFFEAI 25
           G+L + SN   S   L V   +TY+LV G +VE +  E++
Sbjct: 58  GILVINSNSNLSETQLKVVFQETYKLVGGLIVENSSLESL 97


>Z35663-11|CAA84732.2|  791|Caenorhabditis elegans Hypothetical
           protein T04A8.13 protein.
          Length = 791

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 469 NFKIFRKFDFIKHSLGTFFFKVSCFSLPSYYSIGFLRILCA 347
           +F I   F F  HS   FFF  SC S P  ++   + ++C+
Sbjct: 252 HFAILFLFSFSPHSKSMFFFFFSCVSAPLSFNSAHIFLVCS 292


>AC006617-9|AAF39767.1|  409|Caenorhabditis elegans Hypothetical
           protein C39B5.2 protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 202 NVNLCSRRGKSTVENVVCDAF*KRNH 279
           N ++CS + KST EN+  DAF    H
Sbjct: 58  NFSVCSPKTKSTTENIQKDAFIMMKH 83


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,565,899
Number of Sequences: 27780
Number of extensions: 411160
Number of successful extensions: 965
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1956310428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)