Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1494
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyce...    27   4.1  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    26   5.4  
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    25   9.5  

>SPAC26F1.10c |pyp1||tyrosine phosphatase Pyp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
 Frame = +2

Query: 290 KRISYNTESMYVYTFIHIKSTK-----YINLSFYINNTCAAICCQFSTLRKVIYF 439
           K+  Y     Y  T +H+K T      YIN SF    T   I CQ S  R +  F
Sbjct: 297 KKNRYTDIVPYNCTRVHLKRTSPSELDYINASFIKTETSNYIACQGSISRSISDF 351


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 193 YDKKCARQYQLATRLYSLSAILI 261
           YD+K  +QY LA+  YSL  ILI
Sbjct: 248 YDEK-TKQYSLASTTYSLDEILI 269


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/45 (26%), Positives = 26/45 (57%)
 Frame = +3

Query: 222 TCDSTLLFKRHSY*VCSRQRE*INASLIILKACMYTLLFILNQQN 356
           +C++T   ++  Y V ++  + +N   ++LK  M+   F+L Q+N
Sbjct: 122 SCENTEFLEKF-YDVTTKALQNLNNERLMLKVLMHVARFLLTQKN 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,512,663
Number of Sequences: 5004
Number of extensions: 44777
Number of successful extensions: 90
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)