Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1494
         (800 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-1289|AAM68733.2|  414|Drosophila melanogaster CG30030-P...    32   0.79 
AE013599-878|AAM71069.2| 2172|Drosophila melanogaster CG1884-PA,...    31   2.4  
AE013599-877|AAF58926.2| 2170|Drosophila melanogaster CG1884-PB,...    31   2.4  

>AE013599-1289|AAM68733.2|  414|Drosophila melanogaster CG30030-PA
           protein.
          Length = 414

 Score = 32.3 bits (70), Expect = 0.79
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 316 HVCIHFYSY*INKIYKFIILHKQYMCCHLLSVF 414
           HV IH Y   I   Y +++L ++  C HLLS +
Sbjct: 293 HVAIHTYKVVITSTYGYLLLREKRNCMHLLSQY 325


>AE013599-878|AAM71069.2| 2172|Drosophila melanogaster CG1884-PA,
            isoform A protein.
          Length = 2172

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 317  MYVYTFIHIKSTKYINLSFYINNTCAAICCQFSTLRKVIYFRN 445
            MYV   +H +    +NL F I   C  +  + + LR+VIY ++
Sbjct: 989  MYVLAELHQEPDLKLNLKFEIEVLCKTLNLELAKLRQVIYLKD 1031


>AE013599-877|AAF58926.2| 2170|Drosophila melanogaster CG1884-PB,
            isoform B protein.
          Length = 2170

 Score = 30.7 bits (66), Expect = 2.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +2

Query: 317  MYVYTFIHIKSTKYINLSFYINNTCAAICCQFSTLRKVIYFRN 445
            MYV   +H +    +NL F I   C  +  + + LR+VIY ++
Sbjct: 989  MYVLAELHQEPDLKLNLKFEIEVLCKTLNLELAKLRQVIYLKD 1031


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,674,438
Number of Sequences: 53049
Number of extensions: 410133
Number of successful extensions: 650
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3736869864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)