Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1493
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    71   1e-13
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    56   4e-09
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    50   5e-07
SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces...    49   9e-07
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    33   0.047
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    29   0.77 
SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyce...    28   1.3  
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    27   3.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.5  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    25   9.5  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   9.5  
SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    25   9.5  

>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 42/145 (28%), Positives = 72/145 (49%), Gaps = 1/145 (0%)
 Frame = -2

Query: 646 GELWTKGDCFTEYYLN-PEETAKAFTADGWFKTGDILYRDEEDFXYFVERMSMLIKYRSY 470
           GE+  +G   T+ YLN P     +FT D +F+TGD    D++ + +   R+  L+     
Sbjct: 354 GEICVRGINVTKGYLNNPAANKSSFTKDRFFRTGDEGKLDKDGYVFITGRIKELVNRGGE 413

Query: 469 HVIPVEIEGVIRTHEGVLDVSVTSIPSEEDGEHPVACVVRRKDATVTAEEIKDLVADKLS 290
            + P EI+ V+  H  V +    ++P E+ G+   A +      TVT +++ D +  K++
Sbjct: 414 KISPAEIDAVLMQHPDVSEAVCFAVPDEKYGQDIQAAINPVAGKTVTPKQLHDYLEQKVA 473

Query: 289 DSKRLRGGVIFMDELPMTSVGKVAR 215
             K +     F D +P T+ GKV R
Sbjct: 474 AFK-IPKKFYFTDRIPKTATGKVQR 497


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 56.4 bits (130), Expect = 4e-09
 Identities = 42/136 (30%), Positives = 69/136 (50%), Gaps = 8/136 (5%)
 Frame = -2

Query: 655 HVP-GELWTKGDCFTEYYLNPE-ETAKAFTADGWFKTGDILYRDEEDFXYFVERMSMLIK 482
           H P GE+W +G   T  YLN + E  ++FT DGWF+TGD+     E     ++R   L+K
Sbjct: 480 HPPRGEIWLRGPSLTRGYLNRDKENKESFTPDGWFRTGDVGELTPEGLLRIIDRKKNLVK 539

Query: 481 YRSYHVIPVE-IEGVIRTHEGVLDVSVTSIPSEEDGEHPVACVVR-----RKDATVTAEE 320
            ++   I +E +E   RT   V ++ V    +++    P+A +V      RK AT  A  
Sbjct: 540 TQNGEYIALEKLESRYRTSSLVSNICVY---ADQTKVKPLAIIVPNEPVVRKLATEQAGL 596

Query: 319 IKDLVADKLSDSKRLR 272
             D   +++  +K++R
Sbjct: 597 SPDASWEEVCHNKKVR 612


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 49.6 bits (113), Expect = 5e-07
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = -2

Query: 646 GELWTKGDCFTEYYLN-PEETAKAFTADGWFKTGDILYRDEEDFXYFVERMSMLIKYRSY 470
           GE+W +G      YLN PE+   AFT DGWFKTGD+    + +    ++R   ++K  + 
Sbjct: 491 GEVWIRGPAVCNGYLNRPEDNKAAFTEDGWFKTGDVGEIAKGNTLRLIDRKKNIVKSLNG 550

Query: 469 HVIPVE 452
             I +E
Sbjct: 551 EYIALE 556


>SPCC191.02c ||SPCC417.14c|acetyl-CoA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 662

 Score = 48.8 bits (111), Expect = 9e-07
 Identities = 35/155 (22%), Positives = 68/155 (43%), Gaps = 1/155 (0%)
 Frame = -2

Query: 658 PHVPGELWTKGDCFTEYYLNPEETAKAFTADGWFKTGDILYRDEEDFXYFVERMSMLIKY 479
           P     +W   D + + YL P          G++ TGD   RD++ + +   R+  ++  
Sbjct: 481 PSAARTVWRGHDRYIDTYLKPYP--------GFYFTGDGATRDKDGYIWIRGRVDDVVNI 532

Query: 478 RSYHVIPVEIEGVIRTHEGVLDVSVTSIPSEEDGEHPVACVVRRKDATVTAEEIKDLV-A 302
             + +   EIE  + +H+ V + +V  +  E  G+   A ++ +     T E  K+L+ A
Sbjct: 533 SGHRLSTAEIEAALLSHDAVAESAVVGVHDELTGQAVNAFILLKPGYEATVELEKELIMA 592

Query: 301 DKLSDSKRLRGGVIFMDELPMTSVGKVARAKLRQL 197
            + +         +   +LP T  GK+ R  LR++
Sbjct: 593 VRSTIGPFASPRKLIFSDLPKTRSGKIMRRILRKI 627


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 33.1 bits (72), Expect = 0.047
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 479 IFDEHAHSFDE---IXKVLFVSVQNIPGFKPAIRCEGLSSFFWIQVVLCKTISFSPQFSR 649
           I+DE A   +       V +VS+  IP FK  ++  G+SS   ++  L + + F  +  R
Sbjct: 268 IYDEKAVGIESGRYCETVGWVSINGIPSFKSLVKLSGISSLMGVESYLAERLRFIGESIR 327

Query: 650 DMRXQLF 670
               Q+F
Sbjct: 328 RSSQQIF 334


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
 Frame = +3

Query: 246 NSSMNITPPLNLFESDNLSATRSFISSAVTVASFRLTTHATGCS----------PSSSLG 395
           +SS + +   +   S + S++ S  SS+V + S   ++H++  S          PSSS  
Sbjct: 180 SSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSSSSSRPSSSSS 239

Query: 396 ILVTLTSKT-PSCVLITPSISTGIT 467
            + T++S T  S V +TPS S+  T
Sbjct: 240 FITTMSSSTFISTVTVTPSSSSSST 264


>SPBC887.01 |||acireductone dioxygenase family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 178

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 455 DRY-NMVAPIFDEHAHSFDEIXKVL 526
           DRY NMV   F+EH H  +EI  +L
Sbjct: 69  DRYDNMVKKFFEEHLHEDEEIRLIL 93


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +3

Query: 339 ASFRLTTHATGCSPSSSLGILVTLTSKTPSCVLIT---PSISTGIT 467
           +S    +  T  + SSSL    TLTS +PS V  T   PSIS+ I+
Sbjct: 113 SSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSIPSISSTIS 158


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 288 SDNLSATRSFISSAVTVASFRLTTHATGCSPSSSLGILVTLTSKTPSCVLITPSIST 458
           S   S + +  SS+ + +SF  T  ++  S SSS     T +S T S    +PS S+
Sbjct: 298 SSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSSSS 354


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = -2

Query: 397 IPSEEDGEHPVACVVRRKDATVTAEEIKDLVADKLSDSKRLRGGVIFMDELPMTSVGKVA 218
           IP+++ G+ P    +    A + + E +D   D + + +     V   DELP T V    
Sbjct: 171 IPAQQFGQSPWKPPIMSSSAFLLSHE-EDFDDDAVFEGEYY---VHIQDELPKTKVKNYF 226

Query: 217 RAKLRQLAQNL 185
           R  LRQ  + L
Sbjct: 227 RTYLRQKPEEL 237


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +3

Query: 297 LSATRSFISSAVTVASFRLTTHATGCSPSSSLGILVTLTSKTPSCVLITPSIST 458
           LS   SF    +T  S   +T +TG + SS   I  TL + TP+  +  PS +T
Sbjct: 256 LSNATSFFGENLT-PSLAASTASTGSTDSSGSNIANTLIAPTPT--ISPPSANT 306


>SPBC36.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 343

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +3

Query: 231 TDVIGNSSMNITPPLNLFESDNLSATRSFISSAVTVASFR 350
           +D+  N++  +TPP N+  SDN+   +   +S  T+ ++R
Sbjct: 194 SDLGANAADFVTPPGNVANSDNIRILKR--NSIATIGNYR 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,250
Number of Sequences: 5004
Number of extensions: 56686
Number of successful extensions: 153
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)