Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1491
         (440 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   1.7  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   3.0  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    25   3.9  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    25   3.9  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    24   9.0  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    24   9.0  
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce...    24   9.0  
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    24   9.0  

>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 1.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 202 HVTVSRKFETFDVRATRSHTFTL*NYIYKVLVDDSHSERGAHVRRRPR 345
           H    R++E    R++R+H     +Y Y+ L DD  S      R RPR
Sbjct: 184 HSRSRRRYEERSSRSSRAH-----DYDYEDLRDDDRSHERKRSRSRPR 226


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 25.8 bits (54), Expect = 3.0
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +1

Query: 139 FLNLLWICVESKILTLTFFL*HVTVSRKFETFDVRATRSHTFTL*NYIY 285
           F  LL+  + + +    F   H  VS +F    +     HTFT+  + Y
Sbjct: 28  FFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHHHTFTIEAFFY 76


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +1

Query: 325 HVRRRPRATTLHGQAQRSLSPPPRGSEACR 414
           HV  R R   +    Q  L+PPPR SEA R
Sbjct: 359 HVAERHRRNRVPS-VQEVLNPPPRESEAWR 387


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 191 FFYDTLRSQENLRLSTFGRHVHIHS 265
           F Y TL     L  ST G +VH H+
Sbjct: 581 FVYHTLNDIPQLNSSTIGSYVHSHN 605


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +2

Query: 8   FFFLCSKHSYL*YNVVVLFTNKYKFS 85
           FFF+CSK S       VLF+ K  +S
Sbjct: 41  FFFMCSKFSMNSLKFCVLFSFKTVYS 66


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 257 CERVARTSKVSNFLETVTCHKKNVNVSILDSTQIQRR 147
           CE   +T+ + +  E   CH+K+V +  L+    ++R
Sbjct: 303 CEECIQTALLDSDFECPNCHRKDVLLDTLNPDYQKQR 339


>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1297

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
 Frame = +2

Query: 2   FFFFFLCSKHSYL*YNVVVLFTN---KYKFS 85
           F   +  SKH +  YN+++ F N   +Y FS
Sbjct: 341 FIPIYRTSKHEFYDYNIILFFQNSAREYMFS 371


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 283 YKVLVDDSHSERGAHVRRRPRATTLHGQAQ 372
           Y ++VD   S     ++RRP   TL  +A+
Sbjct: 589 YDIIVDSKTSSHNKQLKRRPSNDTLTQEAK 618


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,661,466
Number of Sequences: 5004
Number of extensions: 30081
Number of successful extensions: 62
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 160149590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)