Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1491
         (440 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0046 + 11862923-11863112,11863225-11863406,11863522-118636...    29   1.3  
04_04_0047 + 22346962-22347437,22347874-22348036,22348143-223482...    29   1.7  
03_03_0025 + 13848450-13849420,13850921-13851131,13851327-138514...    27   6.7  
03_06_0720 + 35739383-35739391,35739802-35740275,35740695-357411...    27   8.8  

>09_03_0046 +
           11862923-11863112,11863225-11863406,11863522-11863634,
           11863894-11864140,11864333-11864452,11864601-11864604,
           11864800-11864846,11864992-11865068,11865381-11865431,
           11865519-11865567,11865694-11865718,11866226-11866344
          Length = 407

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 316 RGAHVRRRPRATTLHG-QAQRSLSPPPRGSEACRSPINIC 432
           R AHV   PRA ++ G  A R L P  R + A  +P + C
Sbjct: 16  RAAHVPPAPRARSIRGLAAARGLPPLVRATAAAIAPSSFC 55


>04_04_0047 +
           22346962-22347437,22347874-22348036,22348143-22348217,
           22348302-22348402,22348488-22348603,22348693-22348904,
           22349033-22349124,22349319-22349433,22349654-22349757,
           22349881-22349926,22350007-22350071,22350192-22350272,
           22350356-22350410,22350623-22350711,22350802-22350889,
           22351011-22351091
          Length = 652

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 304 SHSERGAHVRRRPRATTLHGQAQRSLS--PPPRGSE 405
           S S R   +   P A+  HGQAQR L+  PP RGS+
Sbjct: 7   SSSTRATSLVAIPGASCPHGQAQRLLAFRPPRRGSQ 42


>03_03_0025 +
           13848450-13849420,13850921-13851131,13851327-13851459,
           13851576-13851832
          Length = 523

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 310 SERGAHVRRRPRATTLHGQAQRSLSPPPRGSE 405
           S  G+ + RRP+   L  Q+  S  PPP   E
Sbjct: 119 SSGGSRLARRPKKGILKAQSSSSAPPPPPSPE 150


>03_06_0720 +
           35739383-35739391,35739802-35740275,35740695-35741122,
           35741273-35741351
          Length = 329

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = +1

Query: 358 HGQAQRSLSPPPRG 399
           HGQ +R  SPPPRG
Sbjct: 18  HGQQRRGGSPPPRG 31


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,344,435
Number of Sequences: 37544
Number of extensions: 185092
Number of successful extensions: 522
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 835800280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)