Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-1491
         (440 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical ...    27   6.0  
AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AL021503-1|CAA16420.2|  309|Caenorhabditis elegans Hypothetical
           protein Y68A4A.2 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +3

Query: 6   FFFFYVVNIRIYNIMLSFYLQINTNSVN 89
           F +F+   I IY I+L FYL   TN VN
Sbjct: 27  FLYFFFAFIIIYTILLPFYL--FTNKVN 52


>AC006627-3|AAK85461.1|  504|Caenorhabditis elegans Hypothetical
           protein E01A2.4 protein.
          Length = 504

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +1

Query: 364 QAQRSLSPPPRGSEACRSP 420
           Q  RS SPPPR  +  RSP
Sbjct: 138 QVSRSRSPPPRRQQRSRSP 156


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,228,469
Number of Sequences: 27780
Number of extensions: 172454
Number of successful extensions: 365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 756625558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)