Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brP-1486
(800 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003... 35 0.066
04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524... 34 0.15
09_06_0182 - 21397221-21397575,21397712-21398076,21398510-213986... 31 1.1
04_04_0198 + 23502657-23502900,23505228-23505298,23505690-235057... 30 2.5
02_01_0198 + 1334563-1334994,1335872-1335919,1336096-1336351,133... 30 2.5
03_05_0095 - 20745639-20745785,20745880-20746065,20746286-207463... 29 5.7
03_04_0196 - 18365840-18366701,18366875-18366950,18366989-183672... 29 5.7
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 28 7.5
04_04_0387 + 24869594-24871480 28 9.9
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410... 28 9.9
>04_04_1127 -
31098233-31098326,31099968-31100047,31100198-31100353,
31100481-31100616,31101195-31101346,31102307-31102390,
31102495-31102656
Length = 287
Score = 35.1 bits (77), Expect = 0.066
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 116 SLSVSQVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 226
+L + + S+RYL+QL SHP H VK + D F+R
Sbjct: 245 NLHLGKPSSRYLSQLKLSHPDHVLVKRAVSAEDNFER 281
>04_04_1355 +
32851514-32851696,32852132-32852224,32852334-32852485,
32852702-32852837,32852947-32853102,32853233-32853312,
32853475-32853568
Length = 297
Score = 33.9 bits (74), Expect = 0.15
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 116 SLSVSQVSARYLAQLLDSHPQHPFVKEYKAKTDEFQR 226
SL++ + ++RYL QL +HP H VK + D F R
Sbjct: 255 SLNLGKSASRYLNQLKLAHPDHMLVKRMSSAEDSFDR 291
>09_06_0182 -
21397221-21397575,21397712-21398076,21398510-21398685,
21398802-21399039,21399627-21400118
Length = 541
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +2
Query: 110 YNSLSVSQVSARYLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQP 247
+++L VS++ +++LA L + P VKE + DE+ + +Y P
Sbjct: 443 WSNLCVSELLSKWLAHFLHGSFRLPSVKEMEEDIDEWDKYMKRYSP 488
>04_04_0198 +
23502657-23502900,23505228-23505298,23505690-23505727,
23505905-23507693
Length = 713
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 118 PFRFTGVGPIPGPVARQPPPA 180
P G GP+P P+A PPPA
Sbjct: 638 PSMANGAGPVPPPIAVAPPPA 658
>02_01_0198 +
1334563-1334994,1335872-1335919,1336096-1336351,
1336733-1336881,1336969-1337097,1337425-1337592,
1338416-1338610
Length = 458
Score = 29.9 bits (64), Expect = 2.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 146 YLAQLLDSHPQHPFVKEYKAKTDEFQRLAAQYQPS 250
+L+ DS P+HP +K++ + + + A+ QPS
Sbjct: 25 WLSSSSDSEPEHPALKQWTPSSPDSEEAEAEQQPS 59
>03_05_0095 -
20745639-20745785,20745880-20746065,20746286-20746348,
20747255-20747331,20748692-20749121
Length = 300
Score = 28.7 bits (61), Expect = 5.7
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = -3
Query: 294 T*VRITYTPCV*LATEGWYCAARRWNSSVLALYSFTKGCWGW 169
T +R+ PC +EG + AARR+ SS++ ++G GW
Sbjct: 128 TRLRLIVFPCSYACSEGTFIAARRYASSMVPTSIISQGI-GW 168
>03_04_0196 -
18365840-18366701,18366875-18366950,18366989-18367237,
18367819-18367837
Length = 401
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 224 VGTRPSWPCIPSRRDAGGGCRATGPGIGP 138
+G P W +P +RDAGG C T G P
Sbjct: 306 IGDAPDWTQVP-QRDAGGTCLMTHTGGTP 333
>09_04_0151 -
15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Frame = +1
Query: 184 LREGIQGQDGRVPTSGRAV-----PTLSG*LNAWCICNTNLCK 297
L EGI+GQ G VP + P L G N ICN L +
Sbjct: 266 LSEGIEGQGGHVPYRDSKLTRILQPALGGNANTAIICNITLAQ 308
>04_04_0387 + 24869594-24871480
Length = 628
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Frame = +2
Query: 143 RYLAQLLDSHPQ---HPFVKEYKAKTDEFQ 223
R L LL +HP HP+ KE+K K +E +
Sbjct: 403 RCLEFLLTNHPMELLHPYTKEWKVKLEEME 432
>03_05_0257 +
22439915-22440275,22440280-22440627,22440962-22441015,
22441390-22441763
Length = 378
Score = 27.9 bits (59), Expect = 9.9
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -1
Query: 248 RVGTARPDVGTRPSW--PCIPSRRDAGGGCRATGPGIGPTPVKRKGNYIVSVQVTPSIV 78
R G R G R +W PC SRR AGGG PT V G+ +V ++V
Sbjct: 79 RRGRTRGARGRRRTWRRPC--SRRGAGGGVATGSLAAAPTAVS-PGHAVVDQHEAVAVV 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,138,172
Number of Sequences: 37544
Number of extensions: 390031
Number of successful extensions: 1197
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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